G1735932 (pelp1)


Basic Information

Item Value
gene id G1735932
gene name pelp1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 38943178 ~ 38955401 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1988007
TGCTAACCGAGGGTCTGGTGTCTGTTCTGAAAGAGCAGCGGACCGAATATTTACCAGCACTTTTAGCGAATTACCGGGAGCACGGCGTGTTCTCGACACAGATTACTGGAGCTGTCGGTGGTCTTGTGGAACTCAGCAACGCCAAACTCGGCAACAGCAAAACCAAGTTTGAGGGGCTGTGTCTTCTCTCAGTGCTGGTCAAAGACAGTTCAAGTAATGTGTTCCAACAACATTGTCTCTCATGGCTACGGTCCCTACAACAGGTCATACAGtcCCAGGACCCCCTCCCGTCCGTCCAGCTAGCGGCGGGGGTCCTCCAGGACCTGCTCCAGTATTCCTCCCAGCTACCTGAGCTGGCCAGGGAGGTGGGCCTCAACTCTATCCTGGGGATCCTCACCTCCCTGCTAGGCCTCAAGTCTGAGtgTCACCTAGCTGCCATTGAGGGGATGACTGCATGACCTTCTATCCCCAAGCTTGTGGCTCCCTGAGGGACAAACTGGGTGCCTATTTCTTAGCCAAAATGGACAGTGCCAACCCAAAAGGACAAGAGAAGGGACAGTGCAGTATGAAGGGCCAGGTGTAGAGCTGCCCTACTCTCCTCTGCATGACACAGACCCCCTCCTCCTGCTGCAgttacaacacagacacagagctaCCTGCCTggctctcaaacacacactccgtgtgGACCCGGCCTCTGCAGTGCGTCTACCTGTACAGCAGGTGCTAAACCTGGTCTGTCGCGCCCTGGCGGTCAGCTCCAAGAGCATAAATGTAACAGCTGATGGGTGTGTGAAGCTGCTGGTGTTGCCTGCCATACACAAAGATACTCTGCGGGTGCTGCACGCTCTCATCACAGCTTTAGGCAGTGGGTTGGTGCAGTATTCCAGTGTGCTacagagactgttctctcagacCCTGTCTGCCTGGACCCCTCTACCTGAAACCaggtatctcacacacacacacaaaccccctgCGCGCTACGCGTACATACAAACCAAAGGAGGTTGGTGgcttccgctagcggaacccccccctgcaacagccagtgaaagtccagggcgccaaattcaaaacaacaaaaatctcataattaaaattcctcaagcatacaagtattttacaccattttaaagataaaattctcgttaatccagccacagtgtctgatgtcaaaaatgatttacagtgaaagcaccacaaacgattatgttaggtcaccaccatgctacagaaaaacacagccattttttccagccaaagagaggagtcacaaaaagcacaaatagaggtaAAAtttatcactaacctttgatgatcttcatcagatgacactcat

Function

symbol description
pelp1 Predicted to be located in cytoplasm and nucleus. Orthologous to human PELP1 (proline, glutamate and leucine rich protein 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1988007 True 1342 lncRNA 0.51 9 38943178 38955401

Neighbor

gene id symbol gene type direction distance location
arrb2b LOC106608931 coding upstream 4059 38867935 ~ 38939119 (+)
hmgb3a LOC106608930 coding upstream 78648 38857116 ~ 38864530 (+)
LOC110500344 LOC106608928 coding upstream 203470 38726432 ~ 38739708 (+)
LOC110500343 mtm1 coding upstream 222376 38662084 ~ 38720802 (+)
LOC110515117 LOC106608926 coding upstream 288772 38542379 ~ 38654406 (+)
LOC110500354 LOC106608903 coding downstream 738 38956139 ~ 38982550 (+)
alox12 LOC106608934 coding downstream 13982 38969383 ~ 38986233 (+)
zgc:92664 LOC106608937 coding downstream 48337 39003738 ~ 39022864 (+)
LOC118942927 NA coding downstream 183141 39138542 ~ 39154522 (+)
nat16 LOC106608942 coding downstream 223746 39179147 ~ 39211035 (+)
G1735820 NA non-coding upstream 273255 38669409 ~ 38669923 (+)
G1735778 NA non-coding upstream 314769 38592329 ~ 38628409 (+)
G1735795 NA non-coding upstream 315026 38627784 ~ 38628152 (+)
G1735784 NA non-coding upstream 334053 38607190 ~ 38609125 (+)
G1735773 NA non-coding upstream 359380 38583506 ~ 38583798 (+)
G1735986 NA non-coding downstream 79108 39034509 ~ 39178178 (+)
G1736042 NA non-coding downstream 148554 39103955 ~ 39105859 (+)
G1736065 NA non-coding downstream 188309 39143710 ~ 39144316 (+)
LOC110500301 LOC106609063 other upstream 860904 38076983 ~ 38083972 (+)
G1734961 NA other upstream 896672 38045108 ~ 38046506 (+)
G1734960 NA other upstream 898112 38043091 ~ 38045066 (+)
cited1 LOC106609035 other upstream 1179920 37758759 ~ 37765562 (+)
G1736098 NA other downstream 278263 39233664 ~ 39289670 (+)
G1736484 LOC106608963 other downstream 920355 39875756 ~ 39876950 (+)
G1737353 NA other downstream 1107305 40062706 ~ 40063325 (+)
LOC110500409 LOC106599480 other downstream 1446103 40401452 ~ 40404840 (+)

Expression


Co-expression Network