G1742156


Basic Information

Item Value
gene id G1742156
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45026746 ~ 45028648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1995092
GTTGAAGTGTCGTATACATGGGTCGACTTTCTCCACTCAAGAGGATATATTCAAAGATGGTGTCACTGTTGATGATATTTCTAAGTCTCAAAGGAATGGTTTGTTCCTTTATCAAGGCACATAGTCCAACCAGGCCTGGTCATGGTTACTGAGATGGGAGGTAGTGTGACTGTCACTTGCTTTTGGCCGCTTGGTTCAGGCAGACTGTTGGACAGAGACCCCTTCTCATGGCATCATCACTTTTCATTGGCCAAGATGGTTTTTACTACAACAGCTTTACCAAGGACTTCACTGGGACTAAACGTCTGATTGTGAAGAGAGGAGTTGACAGCGTTAACCCGACCATCTCTAAGACACAGTTAGGGGACTCAGCTACATGCTAATGTGCTGCTATTGAAGTGGGCCAAGTCACATTTGGAGGAGCTGTTTTGATTGTCAAAGATTTAGAGTCCAACAGCATGTCTGGGAATGGTACCAAGCTGGATGTTGAGTGTGGTCACTCTGATGATCCACAGATGGGAATCCTGGTCCTTCTCTCCGTCATAAAAACTGGAGTTCCCCTCTGCTGTCTgaccatcttcatcatcatctacACCATCATCCAAACGTTTGGAATGGTTGGTGGGGATCCAAACAATAATCATGTCATATCATTTAGTGTTCTGCGATGTTATTACG
>TU1995093
GTTTGTTCCTTTATCAAGGCACATAGTCCAACCAGGCCTGGTCATGGTTACTGAGATGGGAGGTAGTGTGACTGTCACTTGCTTTTGGCCGCTTGGTTCAGGCAGACTGTTGGACAGAGACCCCTTCTCATGGCATCATCACTTTTCATTGGCCAAGATGGTTTTTACTACAACAGCTTTACCAAGGACTTCACTGGGACTAAACGTCTGATTGTGAAGAGAGGAGTTGACAGCGTTAACCCGACCATCTCTAAGACACAGTTAGGGGACTCAGCTACATGCTAATGTGCTGCTATTGAAGTGGGCCAAGTCACATTTGGAGGAGCTGTTTTGATTGTCAAAGATTTAGAGTCCAACAGCATGTCTGGGAATGGTACCAAGCTGGATGTTGAGTGTGGTCACTCTGATGATCCACAGATGGGAATCCTGGTCCTTCTCTCCGTCATAAAAACTGGAGTTCCCCTCTGCTGTCTgaccatcttcatcatcatctacACCATCATCCAAACGTTTGGAATGGTTGGTGGGGATCCAAACAATAATCATGTCATATCATTTAGTGTTCTGCGATGTTATTACG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106577747

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1995092 False 678 lncRNA 0.45 3 45026746 45028648
TU1995093 True 580 lncRNA 0.46 2 45027945 45028648

Neighbor

gene id symbol gene type direction distance location
LOC110500859 LOC106608737 coding upstream 7977 45015116 ~ 45018769 (+)
LOC110500539 LOC106608730 coding upstream 158068 44863195 ~ 44868678 (+)
ponzr6 LOC106608790 coding upstream 163995 44861211 ~ 44862751 (+)
LOC110500538 LOC106608727 coding upstream 218992 44804798 ~ 44807754 (+)
LOC118942934 NA coding upstream 230456 44789670 ~ 44796290 (+)
LOC110500862 LOC106608740 coding downstream 24674 45053322 ~ 45066445 (+)
LOC118942935 LOC106608740 coding downstream 45139 45073787 ~ 45074436 (+)
dock11 dock11 coding downstream 218927 45247575 ~ 45359292 (+)
il13ra1 i13r2 coding downstream 330856 45359504 ~ 45368212 (+)
trnar-ucu-9 NA coding downstream 349361 45378009 ~ 45378082 (+)
G1742029 NA non-coding upstream 187199 44837922 ~ 44839547 (+)
G1741973 NA non-coding upstream 202178 44818362 ~ 44824568 (+)
G1742012 NA non-coding upstream 225787 44800551 ~ 44800959 (+)
G1741994 NA non-coding upstream 260841 44765688 ~ 44765905 (+)
G1742167 NA non-coding downstream 14218 45042866 ~ 45045645 (+)
G1742298 NA non-coding downstream 201888 45230536 ~ 45244176 (+)
G1742308 NA non-coding downstream 234582 45263230 ~ 45263614 (+)
G1742371 NA non-coding downstream 393649 45422297 ~ 45426947 (+)
LOC110500529 LOC106608720 other upstream 554182 44461338 ~ 44480565 (+)
LOC110500528 tmem256 other upstream 575214 44446186 ~ 44451532 (+)
G1740752 NA other upstream 813516 44212786 ~ 44213230 (+)
G1740453 NA other upstream 1500020 43524736 ~ 43526726 (+)
G1740412 LOC106608825 other upstream 1556421 43469818 ~ 43470325 (+)
fcer1g LOC106608748 other downstream 415879 45444361 ~ 45449712 (+)
LOC110500870 LOC106608752 other downstream 456624 45485247 ~ 45517233 (+)
si:dkey-38p12.3 LOC106608755 other downstream 520469 45544516 ~ 45565742 (+)
G1743043 NA other downstream 610648 45639296 ~ 45639742 (+)
G1743077 NA other downstream 678494 45707142 ~ 45709950 (+)

Expression


Co-expression Network