G1742379


Basic Information

Item Value
gene id G1742379
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45480475 ~ 45521688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1995332
GAAAGttatgaccccttattgatgtcacttgttaaatccacttcaatcagtgtagatgaaggggaggagacaggccaAAAAATGATTTGTAAGCTTTGATATagacattgtgtgtgtgccattcagagggtgaatgggcaagacaaaatatttaagtgccttttaacggagtatggtagtaggtgacaggcgcaccagtttgagtgtgtcaagaactgcaacactgctgggtttttacactcaacagtttcctgtgtgtatcaagaaatggcccaccacccaaaggacatccagccaacttgacagaactgtgggaagcattggagtcaacatgtaccagcatccctgtggaatgctttcggcaccttgtagagtccacgccccaacgaattgaggctgttctgagggcaaaagtgggtgcaactcaatattagggaggtgttcctaatggtttTGTACACCACCGCGTACACGTAAAAACAATCTATTCTTCCAGTTGGGTTGAATTGTCTGTCGTTTGTTAACTAGTCCATCCTCGGAGGGAAATAAAACAAATCTACAGGCTGTTCTGCACCAGTCCTCCTGTCCTTCACATCAGCATACAGGAGACGACCACAGAAATACAATAACTAGAACGGTAATTCCCATTCAAGCCAACATGGTCTGAGGGGCttcccccccctccatcctagtCAATCTATTTGTACGGCGACAACAGGCACATGGAAGTTAAAACCGGCTCACTTCTGGAACTACAAGTTCTGATTCCAAGTAGGTACAATGGGCGAGTTTGTCATGCATGGATATCTGATCCTCGATCAGTTTCTAACTACAGTAGAGCAAAAGGGGCTTCAATGGAACGAAAGTCATCCTGATCAATAACACCACCCCGACTCGGTCGCGGAATGAGGGAAGGGCCAGTGGGTGGTCAAATAAATAGACAAGTAAAAACAGTTTGTGCTACAAATGATATAAATAAGTGCAACGTTTTGATTCAGCAGAGCTTTGGAGTCCTATTCTCCCAGCAATAcacaacacaggaggttggtggcacctgaattggggaggacgggctcgtggtgaTACATCAAACACATTCCCATGTGCGCCGTTCCAGCCGTTATGATGAGTcgtcgtcctcccctcagcagcctccactgatacacaAAGTTGAGCTACTACTTGCGAGTGCACAAGTATTTGGGGGAGTTGAAATATAATATTATTTTTCAAATGGATGGAGTCAAGCTACACAAGGTGGCTGAACGGAGGGGTCGGGCGTAGAAAGGGAAAGGAGAGCGACAGAGCTGGAATTAAGACAAACACAAAGAAAGTTACTGATAAGAGGGAGTAAAAGATTGGTCAAGCTTCGTTGGAacgtacacacatacagtctTTCAAATGAAGACAACTTCATAACAACATACTAGTACAACAACATACTAGTACATAACCAAAtggtccccctccctcccccatacaCACATTCCACTTCTGCTATGTGCTTTATGAAAACGCCAGATCACAGAAATGTCAATAAATAAAACGGgttataaataaacaaaaacataaataacAAGAATtagaaactgggtggttcgagccctgaattctgattggctgacagccgtggtatatctgaccgtataccatgggtatgacaaaacatttattgttACTGCTCTAagtatgttggtaaccagtttataatagcagtaaggcaactcaggagtttgtggtatatggccaatttaccacggctaagggctgtatccaggcactccacgttgcgtcgtgcataagaacagcacttagccgtggtatactggccatataccacacccccttgtgccTTGTTGCTTAAATAAACAACCTGCGGTACACAGACCTCACAGGACTCACATGGTTAAGACTCAAAAGATGACTCACCATGAAAAAAACTATGGAAGCTATTTTAGCCCCCCTGATGAGTTTCAGTAATAACGGACTTGGATCAGCTAGTAACAGACTCAGGTTTTTAAAAAACACTGTAAAACATCGTAGGAGTTCGTCGTTTAAAAACTCCGCTCACACAGTAGAACATTAAAATCTCCTTTCATCACCAAAACCGCAAAAATTAAGCAGTGTTCGCTTTACAACTCGTGGTTGAGTTCTGCCACCCTGTGAACCTAAAATCCTCCACATCCCTCTTGTCTTGTAAAGAGGGCTGTTGATTGGCTGGTGCTCTCCAGTTTCACTACTTGCTGGGTTAAGTTGGTTCAAAGGACCGTTACAAGATGCCTGGGCTGTCGGTTTGGGGTTTGGCAGTGGGGTCCACTGACTAAAACAAGTCCTTTAAAATGCAACGACAACTCCAGCGATGTTGAAGTGACGTGGAGAGGCAAGACAAAGCAAGAAAacaagagatggagggatggatggaggagagatggagagaaggggatagaggagagatagagaagagatcgggagaggagaagagatggggagaggagagatggagaagagatggagagaaggggatagaggagagatggagaagagatggggagaggagagatggagaagagatggggagaggagagatggagaagagatggggagagatggagagaaggggatagaggagagatggagagaaggggatggaggatagatggagagaaggggatggaagagagatggagagaaggggatggaggatagatggagagaaggggatggaagagagatggagagaaggggatagaggagagatggagagaaggggatggaagaaagatggagagaaggggattgaggagagatggagagaaggggatagaggagagatggagagaaggggatagaggagagatggagagaaggggatagaggagagatggagagaaggggatagaggagagatggagagaaggggatagaggagagatggagagaaggggatagaggagagatggagagaaggggatagaggagagatggagagaaggggatggaagaaagatggagagaaggggatagaggagagatggagagaaggggatggaagaaagatggagagaaggggattgaggagagatggggagaaggggatggaagaaagatggagagaaggggattgaggagagatggagagaaggggatagaggagagatggagagaaggggatagaggagagatggagagaaggggatagaggagagatggagagaaggggatagaggagagatggagagaaggggatagaggagagatggagagaaggggatagaggagagatggagagaaggggatggaagaaagatggagagaaggggatagaggagagatggagagaaggggatagaggagagatggagaagagatggggagagggagatgaggacgTGCTCTTTTTTCCTCTGGCCTTCCTGGGTTGCTGGTTGAGGGTAACAGCTGCGAAAGAGCAAAAAAATGAAAAGGGGGGAGGAGGCGAAGGCGAGTAGCGATTTGTCCAGTgtttgttctctccctctcctctctctcgttttcCCAGATGTCTCAAAACTTCTTGGGGCCCCAGGCGGAGGTCTGTTTTGGGGCCAGGCCTGCGCCGAAGGTGGGGAAGTCCTCAGCATTACTCAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1995332 True 3627 lncRNA 0.47 2 45480475 45521688

Neighbor

gene id symbol gene type direction distance location
nectin4a LOC106608750 coding upstream 5561 45455659 ~ 45474914 (+)
fcer1g LOC106608748 coding upstream 30763 45444361 ~ 45449712 (+)
ndufs2 ndufs2 coding upstream 36278 45432580 ~ 45444197 (+)
kirrel1a LOC106608745 coding upstream 61302 45379310 ~ 45419173 (+)
trnar-ucu-9 NA coding upstream 102393 45378009 ~ 45378082 (+)
si:dkey-38p12.3 LOC106608755 coding downstream 22828 45544516 ~ 45565742 (+)
si:dkey-19b23.7 LOC106608757 coding downstream 121173 45642861 ~ 45648249 (+)
LOC110500572 LOC106608759 coding downstream 155973 45677661 ~ 45686049 (+)
LOC110500573 LOC106608761 coding downstream 166762 45688450 ~ 45702662 (+)
LOC110500577 lsmd1 coding downstream 222922 45744610 ~ 45755368 (+)
G1742371 NA non-coding upstream 53528 45422297 ~ 45426947 (+)
il13ra1 i13r2 non-coding upstream 112263 45359504 ~ 45368212 (+)
G1742308 NA non-coding upstream 216861 45263230 ~ 45263614 (+)
G1742298 NA non-coding upstream 236299 45230536 ~ 45244176 (+)
G1742167 NA non-coding upstream 434830 45042866 ~ 45045645 (+)
G1742416 NA non-coding downstream 439 45522127 ~ 45522440 (+)
G1742381 NA non-coding downstream 3689 45525377 ~ 45525723 (+)
G1742383 NA non-coding downstream 4664 45526352 ~ 45526612 (+)
G1742420 NA non-coding downstream 12273 45533961 ~ 45534179 (+)
G1742421 LOC106608754 non-coding downstream 13004 45534692 ~ 45534908 (+)
LOC110500529 LOC106608720 other upstream 1007911 44461338 ~ 44480565 (+)
LOC110500528 tmem256 other upstream 1028943 44446186 ~ 44451532 (+)
G1740752 NA other upstream 1267245 44212786 ~ 44213230 (+)
G1740453 NA other upstream 1953749 43524736 ~ 43526726 (+)
G1743043 NA other downstream 117608 45639296 ~ 45639742 (+)
G1743077 NA other downstream 185454 45707142 ~ 45709950 (+)
G1744645 NA other downstream 1642216 47163904 ~ 47236823 (+)
G1746210 NA other downstream 2573079 48094767 ~ 48095119 (+)

Expression


Co-expression Network