G1743002


Basic Information

Item Value
gene id G1743002
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45579308 ~ 45606291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1996035
TCAGCGGTTTCATTTGTTCCTGTGGAGAGAATAAAATTAAGTTAGATCTCATCTAGGAATATGACGTGTAGAATAGATTTCTCCATCTCATACCATTGTATGGAGAGTGACTGGGGTCTGGGCCTAAGTGGTTCCTTTAGGTTGGTTCATTTGCCAGCTGAAGACTTTGACGTATTTAGCCCTAGGGTTGATGCCAGGCATTTCCCTCCCAGGACTAAGGCCTGTGTTGGAAGTAGTTGTGGAGGTCAACGGTCTTCTGGTAGTGGGTGGAAAGGTGGGCTGAAATGCTATGATTGGACAGAGAGTCAGGTGTAAAAGCTGTAGCAGTTTTACCACCCTCTTTA

Function

NR:

description
uncharacterized protein LOC110500568

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1996035 True 344 lncRNA 0.45 2 45579308 45606291

Neighbor

gene id symbol gene type direction distance location
si:dkey-38p12.3 LOC106608755 coding upstream 13566 45544516 ~ 45565742 (+)
LOC110500870 LOC106608752 coding upstream 62075 45485247 ~ 45517233 (+)
nectin4a LOC106608750 coding upstream 104394 45455659 ~ 45474914 (+)
fcer1g LOC106608748 coding upstream 129596 45444361 ~ 45449712 (+)
ndufs2 ndufs2 coding upstream 135111 45432580 ~ 45444197 (+)
si:dkey-19b23.7 LOC106608757 coding downstream 36570 45642861 ~ 45648249 (+)
LOC110500572 LOC106608759 coding downstream 71370 45677661 ~ 45686049 (+)
LOC110500573 LOC106608761 coding downstream 82159 45688450 ~ 45702662 (+)
LOC110500577 lsmd1 coding downstream 138319 45744610 ~ 45755368 (+)
cnpy4 cnpy4 coding downstream 241895 45848186 ~ 45850007 (+)
G1742428 NA non-coding upstream 38669 45540429 ~ 45540639 (+)
G1742427 LOC106608754 non-coding upstream 39735 45539166 ~ 45539573 (+)
G1742426 NA non-coding upstream 40588 45538406 ~ 45538720 (+)
G1742425 NA non-coding upstream 41884 45537063 ~ 45537424 (+)
G1742424 NA non-coding upstream 42316 45536754 ~ 45536992 (+)
G1743037 NA non-coding downstream 24404 45630695 ~ 45630971 (+)
G1743039 NA non-coding downstream 26847 45633138 ~ 45633376 (+)
G1743060 NA non-coding downstream 58703 45664994 ~ 45665215 (+)
G1743068 NA non-coding downstream 68350 45674641 ~ 45674846 (+)
G1743069 NA non-coding downstream 68815 45675106 ~ 45675347 (+)
LOC110500529 LOC106608720 other upstream 1106744 44461338 ~ 44480565 (+)
LOC110500528 tmem256 other upstream 1127776 44446186 ~ 44451532 (+)
G1743043 NA other downstream 33005 45639296 ~ 45639742 (+)
G1743077 NA other downstream 100851 45707142 ~ 45709950 (+)
G1744645 NA other downstream 1557613 47163904 ~ 47236823 (+)
G1746210 NA other downstream 2488476 48094767 ~ 48095119 (+)
G1746471 LOC106608612 other downstream 2718809 48325100 ~ 48363926 (+)

Expression


Co-expression Network