G1743091 (LOC106608762)


Basic Information

Item Value
gene id G1743091
gene name LOC106608762
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 45718387 ~ 45718742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1996138
AGAGGGTAGCTGTCTGTCCATCTTCTCCTTGTTGTTTGATGTTTCTGTGGCGACAGGGGCTTCCTCGCTCCCCTTGtcattctccttctctctccccttctcctcctcctccatcttctcgCCAGGTGAGAGCGTTACACTACCTGGTTTCTCATCTTTGACCGCCGACCCTTGTTTAGTTGTTCCTCCCGGTGCGCCCCCCgtactctcctcttctcctttcttctcctccactgGGGCCGGAGGGGTGTCAGTCGTTTTTgtttctttcccctcctcttttGTACCACTCTCTTTCCTGTCTGTTGTTGTACTAGGGGATAATTCTTGCGGAGCACCTTTCGTAGGGATTGGAG

Function

NR:

description
chromodomain-helicase-DNA-binding protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1996138 True 356 lncRNA 0.53 1 45718387 45718742

Neighbor

gene id symbol gene type direction distance location
LOC110500573 LOC106608761 coding upstream 15725 45688450 ~ 45702662 (+)
LOC110500572 LOC106608759 coding upstream 32338 45677661 ~ 45686049 (+)
si:dkey-19b23.7 LOC106608757 coding upstream 70138 45642861 ~ 45648249 (+)
si:dkey-38p12.3 LOC106608755 coding upstream 152645 45544516 ~ 45565742 (+)
LOC110500870 LOC106608752 coding upstream 201154 45485247 ~ 45517233 (+)
LOC110500577 lsmd1 coding downstream 25868 45744610 ~ 45755368 (+)
cnpy4 cnpy4 coding downstream 129444 45848186 ~ 45850007 (+)
LOC110500584 LOC106608769 coding downstream 151145 45869887 ~ 45888657 (+)
LOC110500588 LOC106608772 coding downstream 223415 45942157 ~ 45944870 (+)
LOC110500591 LOC106608776 coding downstream 297680 46016422 ~ 46020567 (+)
G1743090 NA non-coding upstream 201 45717973 ~ 45718186 (+)
G1743089 NA non-coding upstream 2243 45715911 ~ 45716144 (+)
G1743087 NA non-coding upstream 5477 45712703 ~ 45712910 (+)
G1743076 NA non-coding upstream 11927 45703176 ~ 45706460 (+)
G1743070 NA non-coding upstream 42545 45675440 ~ 45675842 (+)
G1743092 NA non-coding downstream 1004 45719746 ~ 45720436 (+)
G1743093 NA non-coding downstream 1770 45720512 ~ 45720843 (+)
G1743095 NA non-coding downstream 3254 45721996 ~ 45722206 (+)
G1743094 LOC107738011 non-coding downstream 4325 45723067 ~ 45723371 (+)
G1743096 NA non-coding downstream 5930 45724672 ~ 45725037 (+)
G1743077 NA other upstream 8437 45707142 ~ 45709950 (+)
G1743043 NA other upstream 78645 45639296 ~ 45639742 (+)
fcer1g LOC106608748 other upstream 269700 45444361 ~ 45449712 (+)
G1744645 NA other downstream 1445162 47163904 ~ 47236823 (+)
G1746210 NA other downstream 2376025 48094767 ~ 48095119 (+)
G1746471 LOC106608612 other downstream 2606358 48325100 ~ 48363926 (+)
G1747255 NA other downstream 3258584 48977326 ~ 48977758 (+)
G1747814 LOC106606817 other downstream 3727097 49445839 ~ 49446626 (+)

Expression


Co-expression Network