G1747138


Basic Information

Item Value
gene id G1747138
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 48859812 ~ 48860354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2000468
CTCTTCATGTTTCCCAGTCCCGAGAGAACTGCCTGAGATAGGAATGCCTAACTAAATATTTCTGTTCTTCTCCCGTCATCTTCCAACGTGTACCTTTTGTTGAATCACAAGCCCTGCATTTGCTCATCTCAACTCATCTAACGCCTTTCTCCACTGCTGTAGTAAAGACCCAGAGAGTATTGTAGGTGTTCAAGGTGTTGAGGGCTTACATAGTAAAGACCCAGAGAGTATTGTAGGTGTTCAAGGTGTTAAGGGTTTAGGTATTAAAGACCCAGAGAGTATTGTAGGTGTTCAAGGTGTTGAGGGTTTACATAGTAAAGACCCAGAGAGTATTGTAGGTGTTCAAGGTGTTGAGGGTTTACATAGTAAAGACCCAGAGAGTATTGTAGGTGTTCAAGATGTTGAGGGTTTACATAATAAAGACCCAGAGAGTATTGTAGGTGTTCAAGGTGTTGAGTGTTTACGTAATAAAGACCCAGAGAGTATTGTAGG

Function

NR:

description
Collagen-like protein 4, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2000468 True 492 lncRNA 0.42 2 48859812 48860354

Neighbor

gene id symbol gene type direction distance location
LOC110500610 LOC106608613 coding upstream 445678 48382854 ~ 48414134 (+)
LOC110500605 LOC106608606 coding upstream 901795 47368664 ~ 47958017 (+)
LOC110500876 LOC106577625 coding upstream 1746750 47034102 ~ 47113062 (+)
LOC110500597 LOC106608784 coding upstream 2592890 46216617 ~ 46266922 (+)
LOC110500624 LOC106608622 coding downstream 733032 49593386 ~ 49605877 (+)
LOC110500625 cj011 coding downstream 745745 49606099 ~ 49609714 (+)
aco1 aco1 coding downstream 750897 49611251 ~ 49623432 (+)
LOC110500627 LOC106608625 coding downstream 794338 49654692 ~ 49662658 (+)
LOC110500628 LOC106608626 coding downstream 820314 49680668 ~ 49772757 (+)
G1747110 NA non-coding upstream 44328 48815282 ~ 48815484 (+)
G1747082 NA non-coding upstream 66338 48793274 ~ 48793474 (+)
G1747068 NA non-coding upstream 78892 48780587 ~ 48780920 (+)
G1746766 NA non-coding upstream 100542 48758897 ~ 48759270 (+)
G1746765 NA non-coding upstream 101165 48758434 ~ 48758647 (+)
G1747214 NA non-coding downstream 54978 48915332 ~ 48918035 (+)
G1747229 NA non-coding downstream 76631 48936985 ~ 48937255 (+)
G1747230 NA non-coding downstream 82465 48942819 ~ 48943232 (+)
G1747231 NA non-coding downstream 83573 48943927 ~ 48944282 (+)
G1747232 NA non-coding downstream 85306 48945660 ~ 48946013 (+)
G1746471 LOC106608612 other upstream 495886 48325100 ~ 48363926 (+)
G1746210 NA other upstream 764693 48094767 ~ 48095119 (+)
G1744645 NA other upstream 1692158 47163904 ~ 47236823 (+)
G1743077 NA other upstream 3149862 45707142 ~ 45709950 (+)
G1743043 NA other upstream 3220070 45639296 ~ 45639742 (+)
G1747255 NA other downstream 116972 48977326 ~ 48977758 (+)
G1747814 LOC106606817 other downstream 585485 49445839 ~ 49446626 (+)
LOC110500883 LOC106577571 other downstream 1738556 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 2256091 51116362 ~ 51133346 (+)

Expression


Co-expression Network