G1747245


Basic Information

Item Value
gene id G1747245
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 48964208 ~ 48964444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2000579
tgtctcagctcctgctttttccaatttctcttttcttatcctcctggtttttgacgctttgcctgtcctgaccctgtacccacctgcctgaccactctgcctgtctctgcccctgcctgccgtcctgtaccttggccatGACTGGATTATCAAttcctgcctgccttgacctgtcgtttgcctgccccagTGGTTACCATAAACAtggttacttcacacagtctgcacttgggtctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2000579 True 237 lncRNA 0.52 1 48964208 48964444

Neighbor

gene id symbol gene type direction distance location
LOC110500610 LOC106608613 coding upstream 550074 48382854 ~ 48414134 (+)
LOC110500605 LOC106608606 coding upstream 1006191 47368664 ~ 47958017 (+)
LOC110500876 LOC106577625 coding upstream 1851146 47034102 ~ 47113062 (+)
LOC110500597 LOC106608784 coding upstream 2697286 46216617 ~ 46266922 (+)
LOC110500624 LOC106608622 coding downstream 628942 49593386 ~ 49605877 (+)
LOC110500625 cj011 coding downstream 641655 49606099 ~ 49609714 (+)
aco1 aco1 coding downstream 646807 49611251 ~ 49623432 (+)
LOC110500627 LOC106608625 coding downstream 690248 49654692 ~ 49662658 (+)
LOC110500628 LOC106608626 coding downstream 716224 49680668 ~ 49772757 (+)
G1747241 NA non-coding upstream 5372 48958607 ~ 48958836 (+)
G1747239 NA non-coding upstream 9018 48954935 ~ 48955190 (+)
G1747237 NA non-coding upstream 10408 48953567 ~ 48953800 (+)
G1747236 NA non-coding upstream 13183 48950771 ~ 48951025 (+)
G1747234 NA non-coding upstream 15734 48948200 ~ 48948474 (+)
G1747250 NA non-coding downstream 5028 48969472 ~ 48970115 (+)
G1747253 NA non-coding downstream 10659 48975103 ~ 48975390 (+)
G1747260 NA non-coding downstream 26363 48990807 ~ 48991075 (+)
G1747311 NA non-coding downstream 109175 49073619 ~ 49073855 (+)
G1747328 NA non-coding downstream 147794 49112238 ~ 49112511 (+)
G1746471 LOC106608612 other upstream 600282 48325100 ~ 48363926 (+)
G1746210 NA other upstream 869089 48094767 ~ 48095119 (+)
G1744645 NA other upstream 1796554 47163904 ~ 47236823 (+)
G1743077 NA other upstream 3254258 45707142 ~ 45709950 (+)
G1743043 NA other upstream 3324466 45639296 ~ 45639742 (+)
G1747255 NA other downstream 12882 48977326 ~ 48977758 (+)
G1747814 LOC106606817 other downstream 481395 49445839 ~ 49446626 (+)
LOC110500883 LOC106577571 other downstream 1634466 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 2152001 51116362 ~ 51133346 (+)

Expression


Co-expression Network