G1747250


Basic Information

Item Value
gene id G1747250
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 48969472 ~ 48970115 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2000584
CGACAGATGGCGACCTCAGCGTACAGAGTCGAGTCTGTGTGGCACGCGTTTGTTTTTAATCGCTGACTTGAGCTCAAGCTGGTGACCTCTGGAGAGTTCATTTACCTGGCCTACACTTCATAAATAGAAAAGAAAATGTATCGGACATGAGTCCAGGCTACCATTAAATCTGTAAATAGTTCATGACCATATCATAAATCATGTTAtaatttgacatttgagtcatttagcaaacgttcttatccagagagacttaccggagcaattagggttaagtgccttgctcaagggcacatcgacagatcttTTACCTTGTCGACTAGGGGATTCtaaccagcgacctttcgattactggcccaatgctcttaaccgctaggctacctgactctGGGGTAAAAAGGAGACCAGAGAGACTTGGGAAAGAAAAACAAGATGTAGTATGATATGCTCTCTTACCTCAAACAAGTTAGAAGCCTCGTTGCCATATTGACTGGAAATTATCTCTGATTGGTCACTGTACCACTTGAGCCCGCCCAGGAAGCTATCTGCATCCAGGTCGCTGACATCAAGCTCTGAGAGGTCAAGTTCGGGGAGGTCCGGGCAGAGGGGTTGGTCTTCGCCAACCAAAGCAGCACACTGGGGAG

Function

NR:

description
peroxisome proliferator-activated receptor gamma coactivator 1-alpha isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2000584 True 644 lncRNA 0.46 1 48969472 48970115

Neighbor

gene id symbol gene type direction distance location
LOC110500610 LOC106608613 coding upstream 555338 48382854 ~ 48414134 (+)
LOC110500605 LOC106608606 coding upstream 1011455 47368664 ~ 47958017 (+)
LOC110500876 LOC106577625 coding upstream 1856410 47034102 ~ 47113062 (+)
LOC110500597 LOC106608784 coding upstream 2702550 46216617 ~ 46266922 (+)
LOC110500624 LOC106608622 coding downstream 623271 49593386 ~ 49605877 (+)
LOC110500625 cj011 coding downstream 635984 49606099 ~ 49609714 (+)
aco1 aco1 coding downstream 641136 49611251 ~ 49623432 (+)
LOC110500627 LOC106608625 coding downstream 684577 49654692 ~ 49662658 (+)
LOC110500628 LOC106608626 coding downstream 710553 49680668 ~ 49772757 (+)
G1747245 NA non-coding upstream 5028 48964208 ~ 48964444 (+)
G1747241 NA non-coding upstream 10636 48958607 ~ 48958836 (+)
G1747239 NA non-coding upstream 14282 48954935 ~ 48955190 (+)
G1747237 NA non-coding upstream 15672 48953567 ~ 48953800 (+)
G1747236 NA non-coding upstream 18447 48950771 ~ 48951025 (+)
G1747253 NA non-coding downstream 4988 48975103 ~ 48975390 (+)
G1747260 NA non-coding downstream 20692 48990807 ~ 48991075 (+)
G1747311 NA non-coding downstream 103504 49073619 ~ 49073855 (+)
G1747328 NA non-coding downstream 142123 49112238 ~ 49112511 (+)
G1747329 NA non-coding downstream 143435 49113550 ~ 49113764 (+)
G1746471 LOC106608612 other upstream 605546 48325100 ~ 48363926 (+)
G1746210 NA other upstream 874353 48094767 ~ 48095119 (+)
G1744645 NA other upstream 1801818 47163904 ~ 47236823 (+)
G1743077 NA other upstream 3259522 45707142 ~ 45709950 (+)
G1743043 NA other upstream 3329730 45639296 ~ 45639742 (+)
G1747255 NA other downstream 7211 48977326 ~ 48977758 (+)
G1747814 LOC106606817 other downstream 475724 49445839 ~ 49446626 (+)
LOC110500883 LOC106577571 other downstream 1628795 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 2146330 51116362 ~ 51133346 (+)

Expression


Co-expression Network