G1747831


Basic Information

Item Value
gene id G1747831
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 49456453 ~ 49457150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2001210
GCTCCAGCATCAAACATTCTCTTACATGAACAATCATACAGTTGTGACTAAATACCCTAGTAGGCAACAGTTAACAGTGTTCTTCCATAAAATCTCCCACTCAGAATGCATGACAATCACTGGGCCTGCTTACAACTGCAGGCTAAAATAGAATAATGAGTAGCAAACCCTTTTTATACACTGCTGGCCTATATATAATGTATTTTTTGTGACAATCTAATAGAAAGTATTCCTGAAAATATTATACTAAAATCAACCATTTTCCTTCAAAACATTGTGTCAAATTTGCACTAATCTATTTACTCTAAAGAATGGGAATGTAAATATATTGAATTTCAACAGCATCTTCCAAATTAAAAAAAGGTCTGTGTTTaaacaggcagaccaattctgatatttttggtcttttgaccaatcagatcagctctattgccaataattgggcaaaaaaaaatcagaattcaGAATTGGACTGTGTGTAAACACATATATGTCAGCATCATGAGCTTAGTTCCTCTGcattaaataaaacatctcagATCAGGTCGTCTTGTATTCCAGTTCTGTTTCTTGGCAAACTTGTAAACGCATCCAAAGAGAtcaggaaacattgtcaccagaTCTTTGCAAACACAGCAGGCCGCATCTGCATCCTTATCCGCAACCTTAGTGCTACAGAAAGACAGaaaacacacatt

Function

NR:

description
serine/threonine-protein kinase/endoribonuclease IRE1a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2001210 True 698 lncRNA 0.36 1 49456453 49457150

Neighbor

gene id symbol gene type direction distance location
LOC110500610 LOC106608613 coding upstream 1042319 48382854 ~ 48414134 (+)
LOC110500605 LOC106608606 coding upstream 1498436 47368664 ~ 47958017 (+)
LOC110500876 LOC106577625 coding upstream 2343391 47034102 ~ 47113062 (+)
LOC110500597 LOC106608784 coding upstream 3189531 46216617 ~ 46266922 (+)
LOC110500624 LOC106608622 coding downstream 136236 49593386 ~ 49605877 (+)
LOC110500625 cj011 coding downstream 148949 49606099 ~ 49609714 (+)
aco1 aco1 coding downstream 154101 49611251 ~ 49623432 (+)
LOC110500627 LOC106608625 coding downstream 197542 49654692 ~ 49662658 (+)
LOC110500628 LOC106608626 coding downstream 223518 49680668 ~ 49772757 (+)
G1747818 NA non-coding upstream 7350 49448831 ~ 49449103 (+)
G1747816 NA non-coding upstream 8365 49447523 ~ 49448088 (+)
G1747802 NA non-coding upstream 20471 49435775 ~ 49435982 (+)
G1747780 NA non-coding upstream 39209 49417037 ~ 49417244 (+)
G1747776 NA non-coding upstream 41938 49414069 ~ 49414515 (+)
G1747833 LOC106608620 non-coding downstream 1098 49458248 ~ 49584762 (+)
G1747830 NA non-coding downstream 2538 49459688 ~ 49585172 (+)
G1747842 NA non-coding downstream 21789 49478939 ~ 49485923 (+)
G1747832 NA non-coding downstream 106383 49563533 ~ 49581388 (+)
G1747905 NA non-coding downstream 207654 49664804 ~ 49665123 (+)
G1747814 LOC106606817 other upstream 9827 49445839 ~ 49446626 (+)
G1747255 NA other upstream 478695 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 1092527 48325100 ~ 48363926 (+)
G1746210 NA other upstream 1361334 48094767 ~ 48095119 (+)
G1744645 NA other upstream 2288799 47163904 ~ 47236823 (+)
LOC110500883 LOC106577571 other downstream 1141760 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 1659295 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 1676939 51134089 ~ 51142008 (+)
G1749651 NA other downstream 1905536 51362686 ~ 51363380 (+)

Expression


Co-expression Network