G1747833 (LOC106608620)


Basic Information

Item Value
gene id G1747833
gene name LOC106608620
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 49458248 ~ 49584762 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2001214
CCTCTGTGGTTTCCAGAAGAGGGGATGATTCAGGGTCTCCTCCACTGTAGGTCTCCCATCAgggttttcattgatcatccacTCAATGAGGTCTTTTGCCACCTCGTCTGCCACATGTTCTAGTGTGTAAGTCCCCTTGATTATGTTTCGATTCTGTTCAAGTTCCTCACCAAGTGGACCTTCAAAGGGGTGGTGTCCACCAGAAAGGACGTAGTATACCAACATCCCAGCCACCTGAAATTACAACAATCATTCAGTCCATCGCTCTACAAACAGGAAATAATCTTTATTCTATCTTCACGTTGCTCAACCTGTATATCAGAGCTCCTCTTATATCCAGAGCCTTGTTTGTCTAACGTCTCCTTGGCCATCCAGCATTTTGTTCCCGCAGGGACTGTGTATCGAGTTGTTTGTTCCACTGTCAATCTGCGACTTATGCCAAAATCTGCCAATTTTGCATTTCCATTGATATCTGTTAAGG

Function

NR:

description
uncharacterized protein LOC110500620

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2001214 True 481 lncRNA 0.45 3 49458248 49584762

Neighbor

gene id symbol gene type direction distance location
LOC110500610 LOC106608613 coding upstream 1044114 48382854 ~ 48414134 (+)
LOC110500605 LOC106608606 coding upstream 1500231 47368664 ~ 47958017 (+)
LOC110500876 LOC106577625 coding upstream 2345186 47034102 ~ 47113062 (+)
LOC110500597 LOC106608784 coding upstream 3191326 46216617 ~ 46266922 (+)
LOC110500624 LOC106608622 coding downstream 8624 49593386 ~ 49605877 (+)
LOC110500625 cj011 coding downstream 21337 49606099 ~ 49609714 (+)
aco1 aco1 coding downstream 26489 49611251 ~ 49623432 (+)
LOC110500627 LOC106608625 coding downstream 69930 49654692 ~ 49662658 (+)
LOC110500628 LOC106608626 coding downstream 95906 49680668 ~ 49772757 (+)
G1747831 NA non-coding upstream 1098 49456453 ~ 49457150 (+)
G1747818 NA non-coding upstream 9145 49448831 ~ 49449103 (+)
G1747816 NA non-coding upstream 10160 49447523 ~ 49448088 (+)
G1747802 NA non-coding upstream 22266 49435775 ~ 49435982 (+)
G1747780 NA non-coding upstream 41004 49417037 ~ 49417244 (+)
G1747905 NA non-coding downstream 80042 49664804 ~ 49665123 (+)
G1747966 NA non-coding downstream 83985 49668747 ~ 49668956 (+)
G1747975 NA non-coding downstream 90473 49675235 ~ 49675508 (+)
G1747977 NA non-coding downstream 91289 49676051 ~ 49676367 (+)
G1748021 NA non-coding downstream 174328 49759090 ~ 49759342 (+)
G1747814 LOC106606817 other upstream 11622 49445839 ~ 49446626 (+)
G1747255 NA other upstream 480490 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 1094322 48325100 ~ 48363926 (+)
G1746210 NA other upstream 1363129 48094767 ~ 48095119 (+)
G1744645 NA other upstream 2290594 47163904 ~ 47236823 (+)
LOC110500883 LOC106577571 other downstream 1014148 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 1531683 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 1549327 51134089 ~ 51142008 (+)
G1749651 NA other downstream 1777924 51362686 ~ 51363380 (+)

Expression


Co-expression Network