G1747830


Basic Information

Item Value
gene id G1747830
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 49459688 ~ 49585172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2001204
TAAGTAGTCCTTCAGGTACCGGAGTCAGTCCCAGAGAGCTGATGTAACCAGGAACACAACTAAATGTGTAAAGATCTGCTAGCAACGCATAGGCATACATCTTCAATTCATAGGGATAACCCTTCCTCTGTGTGCATGGGACAATGTGCTTGCATATTTCCTCAAGGTCAGAGTTGCTCCAACGATCCTTGTCTTTTGTCTTCTGTGTGATGCCATAGAGCGTAACAATGATCAATGGCACGAGATAATCTTCTGTTTTAGAGGAAAGCAGTTTCACTAACTCAGGAATTAGGGTAAGTGACACCTCATTAGGTATTTCCTTCATGGCGCAAACAAGTCTAAGGATTTCAATGCACCTGCCCTAAATTTCAGAGGAACTGTGGACAGACGTCTGCTTACAACTTCAACATAGGAAACTAGTTTATTGGAGTCGTTCAACCATTTAATGGCTTTCTGGAAGTATTCGTCTTCATTTGCACCTTCAATGTTAAAGCACATGTCAATCATAGTGAGGTGGGTTTGTGGGTTCTCCTCTAGTAAGTGAAGATCATAGTGATTGAAAACATCTGTTGGGGATGTTTGTTTTATTGCTTGTGCAAAATTGAAAAAAAGCTTGATTTTGAAAAAGAACCCACTCTCTTCAGCAAAGTTTCCAATTATTGTGGCCAATTTCTGATCAATTGCAGGATGGACGCCATGATTTAGCCAAATTAAAGCTCCAGATTTGAGAAGCTCCTTCACAATATCCTCTCTGTCATGTGCTAATTGAATTGGAAAGAATGGTTGTTCTGCTAGACCATTTGGATCTGCCTTTGCTTCCAGTAATGTTGTCACTATTTTCACTGGAACTTCACGCAGTCCAGCATAATGCAGTGGTGCTAAATATCTCTTTGATGGTTTGTTGGGGTCAGCACCTTTTCCCAGAAGAAATGTACAAATCTCCTGATTTGCAAATGCAACAGCAGCAATTAAAGGGGTTACTTCATCTTGTAACTCAACACAAGGGTACAATGCATTGATGTCCTTGCCTCTAatcaatttcttcagcctcttcaGATTATTATTAATGATGCACTTTATAATAGGATCTGTTGGCTCTGAGATAACCAGTCTGGCCAGATGTTCAAAAAAGTCTTCCATAATTCCTATCAATTTT
>TU2001207
CTGTGGAGTATGTTGGTGTCTTTACTGTGAAGCACTCCCAGACTAGAGAGAACATCATGTACAATTTCCTTCAGAACACGAGGGTTGTCCTTTGGTAAGTGGTCTTTGATGTATTCATCCAAGGTGTATTCGCACAGCTGAAGAACAAGGTAGCCAAAGATTGTATCCTCGGCAAAGTCAACATATCTTACAATGTAGGGATTATCAAGTTTAGGAAGACGTAGGAATTCCTCCTCATTCTTGAGAACTTGATAGTTTAATCTGGTCATTCTCTTAACTGCTACTTCAGTGCCATCATCCCTGAGGCCCAAGAAGACCTCAGTTCCATCACTCCCCTTTGCTATGTAGAATTCTGCATCATCTACAATAGTGAGGTTTCCTACTTTATAAACTTTACTTTCATCCATGTTGGCAAGCTTCTCTAACTGTGTCTCCCACCGCTTGCTGACTTTGTGCCATTTGCGCTGTGATGGTGATGTGCCAGTGGTGGGGTGGAACGGCTTGACACTAGAACACTCATCAAGGCCAGATTCCTCAACAGGTGTAGATGAAGTATTGAAGGCTAAACAGGTTTTATTTTcttgtgtgtctgtctcttctTTTGGTATGTCTTGTTTTTCTGCCgttcccctcttcttcttcttcttcttcttcttcttggtttCTGACAAATGACTGTCTTTtgaatcttcacttgttgacttGGAGACAGAACGTTGTTTGTCTAAGGACATGTTTAGATCTCTCAGCTTTACTTTCAGGTTTTCATCCCTTCCCCAGTTAAGTAGTCCTTCAGGTACCGGAGTCAGTCCCAGAGAGCTGATGTAACCAGGAACACAACTAAATGTGTAAAGATCTGCTAGCAACGCATAGGCATACATCTTCAATTCAGAGGGATAACCCTCCCTCTGTGTGCATGGGACAATGTGCTTGCATATTTTCTCAAGGTCAGAGTTGCTCCAACGATCCTTGTCTTTTGTCTTCTGTGTGATGCCATAGAGCGTAACAATGATCAATGGCACGAGATAATCTTCTGTTTTACAGGAAAGCAGTTTCACTAACTCAGGAATTAGGGTAAGTGACACCTCATTAGGTATTTCCTTCATGGAGCAAACAACTTTATCCAAGGATTTCAATGCACCTGCCCTAAAAAGCTGAGGAATTGTAGACAGACGTTTGCTTACATCTTTAACATAGTAATCTAGTTTATTGGAGTCGTTCAACCATGTAATGGCTGTCTGGGGGTATTTTTCTGCATATGGACCTTCAATGTTAAAGCACATGTCAACCATAGTAAGGTGGGTTTGGGGGTTCACCTGTAGAAGGTTCTGGGCAAAGCTGCTGAACACTTCTGTTGGGGATGTTTGTTTTACTGCTTTCacaaaattaaaaaaaatcttgATTTTGGAAAATAACTCACTCTCTTCAGCAAAGTTTTCAATTATTGTGGCCAATTTCAGATCAATTGCAGGATGGATGCCATGATTTAGCCACATTACAGCTCCAGATTCGAGCAACTTCTTcacaacatcctctctgtcatgtGCTAATTGAATTGGAGAGAACTTTGGTTTTACAGGTAGGCCTGTTTCTACTAGACCATTTGGATCTGCCTTTGCTTCCAGTAATGTTGTCACTATATTCACTGGAACTTTATGCAGTCCAGCATAATGCAGTGGTGCTAAAAGTATTTTTGATGGTTTGTTGGGGTCAGCACCTTTTCCCAGAAGAAATGTACAAATCTCCTGATTTGCAAATGCAACAGCAGCAATTAAAGGGGTTACTTCATCTTGTAACTCAACACAAGGGTACAATGCATTGATGTCCTTGCCTCTAatcaatttcttcagcctctccAGATTATTATTAATAATGCACTTGATAATAGGATCTGTTGGCTCTGAGATAACCAGTTTGGTCAGGAGTTCTTGAAAATCAATCTTGTGTTCCATAATTCCTGACGATGTCATCTACACAGGGGCGTCTGAGG
>TU2001208
CAAAACATTCTGAGGTTTGATATCCCGATGAAGGACTTTGGTAGTTGGACAATGAAGGACACTTAAACTGCGGAGCACCTCTTGAGTGATTTTCATCAGGGCATGAGTGTCGTCGTTGGACAGGTGTGTATTAATGTACTCATCCAGAGTGTATTCACAGAGCTGAAGAGCAAGATAACCAAAGAAACTGTCTTCTGCAAAGTCCATGTATCTTACAATACCGCTACTGTCAAGCTCTGGAAGACGTAAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2001204 False 1156 lncRNA 0.40 2 49459688 49477192
TU2001207 False 1990 lncRNA 0.41 2 49475252 49500243
TU2001208 True 251 lncRNA 0.43 2 49543651 49585172

Neighbor

gene id symbol gene type direction distance location
LOC110500610 LOC106608613 coding upstream 1045554 48382854 ~ 48414134 (+)
LOC110500605 LOC106608606 coding upstream 1501671 47368664 ~ 47958017 (+)
LOC110500876 LOC106577625 coding upstream 2346626 47034102 ~ 47113062 (+)
LOC110500597 LOC106608784 coding upstream 3192766 46216617 ~ 46266922 (+)
LOC110500624 LOC106608622 coding downstream 8214 49593386 ~ 49605877 (+)
LOC110500625 cj011 coding downstream 20927 49606099 ~ 49609714 (+)
aco1 aco1 coding downstream 26079 49611251 ~ 49623432 (+)
LOC110500627 LOC106608625 coding downstream 69520 49654692 ~ 49662658 (+)
LOC110500628 LOC106608626 coding downstream 95496 49680668 ~ 49772757 (+)
G1747831 NA non-coding upstream 2538 49456453 ~ 49457150 (+)
G1747818 NA non-coding upstream 10585 49448831 ~ 49449103 (+)
G1747816 NA non-coding upstream 11600 49447523 ~ 49448088 (+)
G1747802 NA non-coding upstream 23706 49435775 ~ 49435982 (+)
G1747780 NA non-coding upstream 42444 49417037 ~ 49417244 (+)
G1747905 NA non-coding downstream 79632 49664804 ~ 49665123 (+)
G1747966 NA non-coding downstream 83575 49668747 ~ 49668956 (+)
G1747975 NA non-coding downstream 90063 49675235 ~ 49675508 (+)
G1747977 NA non-coding downstream 90879 49676051 ~ 49676367 (+)
G1748021 NA non-coding downstream 173918 49759090 ~ 49759342 (+)
G1747814 LOC106606817 other upstream 13062 49445839 ~ 49446626 (+)
G1747255 NA other upstream 481930 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 1095762 48325100 ~ 48363926 (+)
G1746210 NA other upstream 1364569 48094767 ~ 48095119 (+)
G1744645 NA other upstream 2292034 47163904 ~ 47236823 (+)
LOC110500883 LOC106577571 other downstream 1013738 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 1531273 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 1548917 51134089 ~ 51142008 (+)
G1749651 NA other downstream 1777514 51362686 ~ 51363380 (+)

Expression


Co-expression Network