G1747972


Basic Information

Item Value
gene id G1747972
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 49773493 ~ 49776111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2001404
TCTAGCCTTGTCAGTTCACAATAAAGGCACCTGGTTTGAGCCCACCACCAGTGAAATACCAGGGTAACATTCGAAGTGTCATCATAGATTGTTCTACTGTGTCAATATCAAGTGTGTTATGTCGATCCCACGAAATTCCTCCTTTAGAAAAATCATAATTACAGGATGATGCAACAATCCACGAGAAATGTGGCACCTAGCATTTGACAAAATTTTGAAGCGTCCATTATGGGTTTGGATTTGGAACAGGCATGTGTAGGCAACATCAAGCAAGTAGTTCCGCTGTGAGGATTGGGTGAAGTAAGTCCTTTGTGGCCCCCAGGCATCACAGATTTTTGCACTTTTCATAATTTCatctacagtgagctccaaaagtattaggacagtgacacatttttgttcttttggctctgtactccaagACTTTGAAATGGTACAATGACTATGAAGTTTAAGTACAGACtgccagctttaatttgagggtattttcattcatattgggtgaaccgtttagaaattactccactttttgtacatagtcccccaatTTTATGGGAACAAAAGTATTGGGagaaattcacttatgtgtattagcGTAGTAAAGAGTTAAGTATTTGGTTCCATGTTCATAACATGCAATCAAGTTTGTGACTCTACGAACTTGTTGGAttcattttctgtttgttttgtttgtgtttcagattattttgtgcccaattgaaatgaatgataaataatgtattgtgtcacttttattgtaaataagaatagaatatattTCTAAAgactacattaatgtggatgctaccatgattacgataatcctgaatgaatcgtgaataatgatgagtgagaaagttacaaacgcacaaatatcatacccccaagaaatgctaacctctcaccattacaataacaggggaggttagcatttttggggggtatgatatttgtgcgtctaactttctcactcgtcATGATTCACAACTCATTCAGGATGCTGTAAAGTGTTTAGAGACATATtctattattatttacaataaaagtgacaacAAAATTAcgcaatacattatttaccatgaaTATGGGACTAAATACTTAAGTTTGTACTACTTTAAtgcacataagtgaatttgtcccaatacttttggtctcctaactatgtacaaaaagtcCTGTAAATTCTTaacagttcacccgatatggatgaaaacacCTTTTATATCAGTGTCCCACTCATGGTAGATATTTAATAAGTAGACAGGTATAGGCAGGTTTTGTTTTGCATACATTGCATAATGTTTATTTTCAAAGGgctaatttgatttgatcatctaTGGACATCATGTACAAGGGTTAAACCGTTTTCACAGAATGACATGTAGGCCCACAGATGAGAAAGGCATGACAGAGATGAGTACTATTCAATATTCAGTAATGATCGTTGTAGGCTATCCATGGTCAACCGTTCAATCAGTACCTTATGCAAGAAAGACCAGTGGCAATCATGCAATATCTGTGTAGTTATACTTACTTAATGTTCAGTGCTCTAGGGATTAAGAGGACAGATGGATGGACAAAAGTGTTTTCAGGAGGTGTGTTTTTACGTGAGCAATAGATGTGTTCCATGTATTGATTATTAACATCAGGTTGTTGTTGTAAGCAGGAAACATAAAAACCAGCATTTTCTGTATTACTAATCACTTAAGTAAATATATGAATAATTCAGTGCCTGTTCAAGCTCACCGTCTCAGTGGAGTGTCCATTGTCAATAAATGTGatatgacaacaaaaaaaaagtgaaacAACTTAAAAACGAAGTGATATGTGTGGAGCGCCTTGGCGTGTTCTCTCAAATCTTTTTGAATTTTtagttttgtttgttgttttgtttttggtttGAGATGTGTCTTTGCAAGAGGGTTTTTTTTGTGCTTCATTCACTTGAAGGCCAGCTGGGTACGCCCATCTCATGCTTGCTCTTTGAGGGGAAAAAGCTATGTTGTACACGTCGTTTGGACAGTGTGTTTCTTTGGATTGTCAATTGCTACATTATGTTAACTAATGACATTTGAAAATGCTTGCCAACGTCTCAGAATGGTTGACTTCTTCTGGGTCTTGTGGCACTTTTACTCCCTCTGCACACACATTATTACTATGGCGAATCACTTCAAGGTGAATTTAAAAACACAACTACTACAACACCACCAACGAAACAATACGTAACAGTCTCCAGTAGTAACTTGTAGTTACACAGCAGGTGTGTGCAAAAGTCTACGTATGTATTGAATGTAGGTTTTAGAGGACTTTTGAAACCTTTTTGTTGATATGCGTCGTGAACTGTATAGCGAAGGCCTTGATATCCCTTCTATTTGTTTCCTTTTTTGATTGTAGAACACTAAAGCAGTAGGCAATGCCTTTGAGATGGTTACATTTGGTGCAGGGGCTAAAATTGCCACAAGATTAAAATCAGTGTAAATAAGGCTCTACATTTTTGGTGATTGTTACTGTTATATCCAACCTATACTGCTAGCAGATGTTTTTACTGCAGTCAATTACTGGACGTGGATATATTTCCTATGCAAAACTGTTTAAACAATAAAATGAGCTATGCTACAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2001404 True 2619 lncRNA 0.36 1 49773493 49776111

Neighbor

gene id symbol gene type direction distance location
LOC110500628 LOC106608626 coding upstream 736 49680668 ~ 49772757 (+)
LOC110500627 LOC106608625 coding upstream 110835 49654692 ~ 49662658 (+)
aco1 aco1 coding upstream 150061 49611251 ~ 49623432 (+)
LOC110500625 cj011 coding upstream 163779 49606099 ~ 49609714 (+)
LOC110500624 LOC106608622 coding upstream 167616 49593386 ~ 49605877 (+)
LOC110500629 LOC106608629 coding downstream 114476 49890587 ~ 50027397 (+)
LOC110500631 NA coding downstream 259443 50035554 ~ 50043842 (+)
LOC110500632 ddit4l coding downstream 277777 50053888 ~ 50056399 (+)
LOC110500633 LOC100694115 coding downstream 305443 50081554 ~ 50083324 (+)
LOC110500635 LOC106608610 coding downstream 441040 50217151 ~ 50224340 (+)
G1748026 NA non-coding upstream 5086 49768011 ~ 49768407 (+)
G1748021 NA non-coding upstream 14151 49759090 ~ 49759342 (+)
G1747977 NA non-coding upstream 97126 49676051 ~ 49676367 (+)
G1747975 NA non-coding upstream 97985 49675235 ~ 49675508 (+)
G1747966 NA non-coding upstream 104537 49668747 ~ 49668956 (+)
G1748110 NA non-coding downstream 8455 49784566 ~ 49785100 (+)
G1748114 NA non-coding downstream 11780 49787891 ~ 49788146 (+)
G1748118 NA non-coding downstream 13551 49789662 ~ 49789934 (+)
G1748121 NA non-coding downstream 15568 49791679 ~ 49791918 (+)
G1748132 NA non-coding downstream 23478 49799589 ~ 49799876 (+)
G1747814 LOC106606817 other upstream 326867 49445839 ~ 49446626 (+)
G1747255 NA other upstream 795735 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 1409567 48325100 ~ 48363926 (+)
G1746210 NA other upstream 1678374 48094767 ~ 48095119 (+)
LOC110500883 LOC106577571 other downstream 822799 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 1340334 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 1357978 51134089 ~ 51142008 (+)
G1749651 NA other downstream 1586575 51362686 ~ 51363380 (+)
G1749650 NA other downstream 1642858 51418969 ~ 51450475 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G67291 NA non-coding NC_047598.1 CM018544.1 19743640 ~ 19760630 (+)