G1748484


Basic Information

Item Value
gene id G1748484
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50244580 ~ 50247205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2001992
GGCTAgtacagtttattcagagaacgttctaaagtcaagaatacaaagacatccattttatagctgtgcacatacttccacacaaacagtagatattctacgcacatacatacacacaaacagtagatatcctacgcacatacatacacacaaacggtAGGTGAGTTTTATCCTTCTCCACAGTTCGCACCACTTtgtatcactacccagccgacagttccattcccccgagattagagagaccttgagaagtactccctgtcctctcccaagTCTCTCAGAGGCCTAGCCAGTTTCAATTGTTCTTCTGTATTttactagacacacacacacaagctcctAAGCTACcccttgctcagacagtctgtgtttttccACTGTACAGATACCTTGTTTAACCTGATTccgactaaaactacacacatcatcagattataattttatgactctaatcaatttcatacagtTATAATTATAAGGTTTCAGAGTGGAATTATTTAATAAACCACACAAGAATTACAGGAAATACACATTGTTTTTTTTACCTCATATTGGTGATGTTAGTATAAAAGTTTATAGTCATCACGATGACACACAATTGATTGCCTAATTCAGATCAATATCTTTGTTATTGTGCCAGTGTTTGTCATAAGCGCCTGTCGGTAATGGGACTTAGAATGCAGCTGTCATTTTCAGACCAGGGTGGCATGAAAAAATCTGGGCGCCTCTCTTATAAATATCTCTGGCCTCAATACAATACACGGACGAGGGTCAAACTATCCCTCAAATGAGAGCCAACACTATTTAGAAATGTATATGCAGTGATGATTCTGCGAAATTAATTAGTATAAATACTGTTTTTCCTAAGATTTGTATTGGCTGTCTTCTGTAAACATTGTTTAAAAGGGCAAGTTCGTTTTGCATGGACCGGTAACCTGGGTAGGTGAAGATTTTGCTTAAAGACCAATAGAcgggttagctgacaacgtcacgaAAATGATGtgcttcaatggggcagaaggccgtgattctggatggccagatagcttgCAACAATTACAAAAAGCCTTCATGTGGAGAATCGTAGGTGTCTTGTTTCagctagtttaaaaaaaaatgttgttcttaATATGTCTGCCATGtcttgttttaattttttttgacTGTCATGTAtatgctaatatggctaaaattcgctagctagctaaccaacaaccgcaactatgtatttgagagacaacaattGATCATTGTGCAAATATATtggttttcaataaacattgcagacaaaatatagtttaggctacatgttgtcaacaatctctaagccaacccagtctgttttgccccatagttccGCACGCctcagttttgttgctaaacaacacGTTTATGGAATGGTGTAAAATAAACAAACTCTGCCAACCCGGGGTACCGGCCATGTAAAATAAAATCACCCAAAGTGATTGCATTTGTTTCGTAACCAGCTACCTCCTAAGCCTGAGCCGGGAGTCCCGCTCTGGCCGGTGAtttcggctcaaaacaaaagtgacgtagAAGAGGTATTTTTGTTAATAGAATCGTACCGCAATTAAGAAACTATTCACATTTAtatggagtatttggctgttttggcttcAAGCGACAATTCGCCTTTAAACAGAACATGTATGGTCCTTGGACTAAGGAGTACAGTTTACTCCAATATTAGGCTACATACGCAACGATTCTACATAGTTTATCTTGCGTGATCCGCAGCATTTTTCGTAACCGATCATTCTCTTCCTGGTACTCCGCTACCGTTTTCTCTACCCACTGTAAACGCTGATCTAAAAATAACAAATACCTCTGACTGCAGTGTGCAGTTCTGGGCCGGGTCAATGTGGGCGGAGTCAAACGTTAGACAAAAAAAAAGCACAGGTGGGTGGTGTCAATCTGAAGTTTGACAGTCCCATACtgaatacagacacacacgtttGTGCAAGGCACACGTTGAATACAAACATATTTCATTTTTGAAGATCTTAAGAAATATTATAAAAAGTGGTACCAGCACATGTGTTGTAACACTTTTTGCTTCATGCTATATTTGAGACAAGCTACTGATATTGTTGCAATGAACAACATACTTGTTAtgtatgttatgtactgttaAAATTGTGTTATAACTTTGTAATTATATTATTTAATTGAGCATATATATTCAGTTACTACCTATCCTGAATTATAATGCTATTTACTTTCCTCATGAGAATGGATACAGACTATACCATATAGACATACTGACAAGCTGAATGTGCTTTGTACATTAAGTTATACCAGCTCCAGTACAGAGATGAGAGACTCAGGTGACTTACTAAACATAAAAACATAATTAACAATTGAAACAATTAACACAGCAGACAAAAATAAGGTTTGACCACTCCTCAAAAATGGCTTCACTCCAGCTCCTCAAAAGAGGCAAAGGCAGTCTTTTTCTTGTTGTCAACTGGCTCCACATAAACTGTGTTCTTTTGATTATTGTTGCCGTAGCAATAGCAACAATGAAAGTGTGTCGCATTTCAACAACTGAAGCCACACGTTATGATCGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2001992 True 2592 lncRNA 0.38 2 50244580 50247205

Neighbor

gene id symbol gene type direction distance location
LOC110500637 LOC106608635 coding upstream 4652 50230206 ~ 50239928 (+)
LOC110500635 LOC106608610 coding upstream 20240 50217151 ~ 50224340 (+)
LOC110500633 LOC100694115 coding upstream 161256 50081554 ~ 50083324 (+)
LOC110500632 ddit4l coding upstream 188181 50053888 ~ 50056399 (+)
LOC110500631 NA coding upstream 200738 50035554 ~ 50043842 (+)
LOC110500640 LOC106608639 coding downstream 10468 50257673 ~ 50263754 (+)
spata6l LOC106608638 coding downstream 16706 50263911 ~ 50270551 (+)
LOC110500641 LOC106608640 coding downstream 49855 50297060 ~ 50355717 (+)
LOC110500645 LOC106608645 coding downstream 234637 50481842 ~ 50486101 (+)
LOC110500647 NA coding downstream 241923 50489128 ~ 50494517 (+)
G1748480 NA non-coding upstream 14805 50229311 ~ 50229775 (+)
G1748462 NA non-coding upstream 45034 50199346 ~ 50199546 (+)
G1748450 NA non-coding upstream 62590 50181729 ~ 50181990 (+)
G1748286 NA non-coding upstream 290142 49927491 ~ 49954438 (+)
G1748237 NA non-coding upstream 362946 49881346 ~ 49881634 (+)
G1748486 LOC106608637 non-coding downstream 251 50247456 ~ 50252566 (+)
G1748499 NA non-coding downstream 29511 50276716 ~ 50277372 (+)
G1748517 NA non-coding downstream 110170 50357375 ~ 50358092 (+)
G1748560 NA non-coding downstream 128402 50375607 ~ 50415360 (+)
G1748578 NA non-coding downstream 155416 50402621 ~ 50407729 (+)
LOC110500625 cj011 other upstream 635000 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 797954 49445839 ~ 49446626 (+)
G1747255 NA other upstream 1266822 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 1880654 48325100 ~ 48363926 (+)
G1746210 NA other upstream 2149461 48094767 ~ 48095119 (+)
LOC110500883 LOC106577571 other downstream 351705 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 869240 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 886884 51134089 ~ 51142008 (+)
G1749651 NA other downstream 1115481 51362686 ~ 51363380 (+)
G1749650 NA other downstream 1171764 51418969 ~ 51450475 (+)

Expression


Co-expression Network