G1748486 (LOC106608637)


Basic Information

Item Value
gene id G1748486
gene name LOC106608637
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50247456 ~ 50252566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2001995
gtttatttgaacagtaagagacagATATAATATAGTATTACATTCACACAGAGGATCTACTCCTAACATTTGAACAGAAATGTCCTCTAAAAACCTGCTCTGTTTAAGTCATCTGTAGGTGTCTTCTAACTAGGCTGTTTTTCTGACCATCTTTTGCTTTTACTTATTTTGCATCATTTTGTGACTGGTGCTGATGTATAGGGCTTTATAcattggattgattgattgattgatctcaCCTGGGCCGATAATGCTCTTGTGGATGTACAGACCTTGCAGGGAGACGTGTGACACTCTACAGGAATATATTGCGCACCCCGAGTCCTGAGGGGAGGGCCGCAGCCGGATGAAGGCTGCCACAGAGTGAGTATTGTCATGATGTTGGAGGTGACTAGAGTGCAAGATGTTCCCCAGCTTCTCAGGCCGTTGACCACTGCTAGTCTCCTTGAAAAGGTCAATCTCCACATCCAAGGGGTAAAAGCCATTAGCCTCACACACTATGCTGGGGATCTGCTCCTCCTTTGTGGTCAAGGAAACATCAGGAGGCTCT

Function

NR:

description
tapasin-related protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2001995 True 550 lncRNA 0.45 2 50247456 50252566

Neighbor

gene id symbol gene type direction distance location
LOC110500637 LOC106608635 coding upstream 7528 50230206 ~ 50239928 (+)
LOC110500635 LOC106608610 coding upstream 23116 50217151 ~ 50224340 (+)
LOC110500633 LOC100694115 coding upstream 164132 50081554 ~ 50083324 (+)
LOC110500632 ddit4l coding upstream 191057 50053888 ~ 50056399 (+)
LOC110500631 NA coding upstream 203614 50035554 ~ 50043842 (+)
LOC110500640 LOC106608639 coding downstream 5107 50257673 ~ 50263754 (+)
spata6l LOC106608638 coding downstream 11345 50263911 ~ 50270551 (+)
LOC110500641 LOC106608640 coding downstream 44494 50297060 ~ 50355717 (+)
LOC110500645 LOC106608645 coding downstream 229276 50481842 ~ 50486101 (+)
LOC110500647 NA coding downstream 236562 50489128 ~ 50494517 (+)
G1748484 NA non-coding upstream 251 50244580 ~ 50247205 (+)
G1748480 NA non-coding upstream 17681 50229311 ~ 50229775 (+)
G1748462 NA non-coding upstream 47910 50199346 ~ 50199546 (+)
G1748450 NA non-coding upstream 65466 50181729 ~ 50181990 (+)
G1748286 NA non-coding upstream 293018 49927491 ~ 49954438 (+)
G1748499 NA non-coding downstream 24150 50276716 ~ 50277372 (+)
G1748517 NA non-coding downstream 104809 50357375 ~ 50358092 (+)
G1748560 NA non-coding downstream 123041 50375607 ~ 50415360 (+)
G1748578 NA non-coding downstream 150055 50402621 ~ 50407729 (+)
G1748657 NA non-coding downstream 281443 50534009 ~ 50536926 (+)
LOC110500625 cj011 other upstream 637876 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 800830 49445839 ~ 49446626 (+)
G1747255 NA other upstream 1269698 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 1883530 48325100 ~ 48363926 (+)
G1746210 NA other upstream 2152337 48094767 ~ 48095119 (+)
LOC110500883 LOC106577571 other downstream 346344 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 863879 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 881523 51134089 ~ 51142008 (+)
G1749651 NA other downstream 1110120 51362686 ~ 51363380 (+)
G1749650 NA other downstream 1166403 51418969 ~ 51450475 (+)

Expression


Co-expression Network