G1748560


Basic Information

Item Value
gene id G1748560
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50375607 ~ 50415360 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2002082
gcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattcCCGCATTCTTAAAGCATCttagagtgctgatctaggatcgaCACTTCTATTCATAGGCGCTGGGCACAGCTCTCCTGTTTGAATACACTATACCACGTTGGTTTTAATGAGTCCTTTACGTTCTGTGTAGTCTCTTCCGCTCTTCATTGTCAAAATTGATATTCCATTCACAATCAATGGAAAACAAGAGACGTGACAAAATGAATTAAGGCAGACCACACTAATATGTAAACCTTAAAAGCTAGCTTGTCCAAAGAAAACAGTATTTGCCATAACTACAATGCTTCATGATGCTTTCCAAGGGAGATGTACTAATCTATATATTATGGTTTATGATTAAGGAGTGACCCAAGCATGTACACAAGCAGATTTTTTATCACATGAATGCATATTTTACCATAATCGTTTTAACTGTACGTTGCAGTTAAAAATGAAATcgttaaaaacaaacaaacacattggactgactgactgactggtcaaCAGGTACCGCAGTAACTTACCATGGTTTCTTTTCATGTGAGAGAACAGCTCTCGTGTCTTGCTTAAGGCATGGAGCGATGGCAGGAGAAGGAAAGAGCTGCACGTTAGTGGTTTGGCATCTCAGTTCCCTTCCAATTCACGCTTACGTTTGATGTCTAGTCCCAAAATGTCTGGAACATTCAAGGTTTTTGGGTATACTATTTCTCTCCTATTGGGATGTCAATATGGTAAGAATACAAACTCATATAGTTCTTGCTTTTCTTTAAGACACAAGTGCAGGGTTCTGGAATGTTCTCGAACTGATCTTGACTGACTGTCTGCGGCAGCCTCAATACGCCCTTATCCAACACTTATTCACACACAAACAAGAGAAAAGTACAGCTCAAAAATAAATTGCATCGAGAGAAACACCCACAATGACAATAACATTAGTTTATAAGACTGAATCTGGAGAAATTATCAAGGCACCAATATTCCTCCTCGTTTTGAAAAAAAGGCAACCCCGGTTTTCAAATTTCCCCCATTTAGAaaaatatgtacaaaaaaagACAACCAATGGACTGGTAAAGTTACCGTTTCTAAAAGTGCACATCAATGACAGTGACGATCAGTATTCTGTCCATGGGTGAATGGCCTCCTAGGTTACTACAAGGTGGTTCTAGAGGTCACCGTGGGGCTACAGGACAGTAGGACAGAGCTGGAGCAAAGTCACACAGGACTGGGCAGTGAGATACACACTTCACTCGCTCTACAACATCGATAAAGAAACACACCATTTCATAAAGAACAAGTCTCTCTACCGCACCCTCCAGAATATTCACATAAATAACTATTTGAGTTACAAATCGGCCTGCGGGAAGAGCTACAATAGGCAGGAGAAAAAACATCAACAATAGGGCCTTTCGGGAtagggataaaaaaaaaagtaccatctttgggCGATAGGAGGGTGTAAAAATGATCTGTCCAAGATTCTCCCTTACACCCTGACCCACCACTACCCATCAAGTTtctttcccctttttcctctgtctcctctctgctcctctccacgGCGTGAGTGAGGGCCACAGGTGGAGCACTTCTCAGACCGTCCAGTAGagggcagcggtggcaaggtcaGATGACTGGAGCGCCAAAGCACTTGAGGCACCACTGGACATTGCTGTTGGGTGGCCGGTCAATCTTGTGCAGAGCCTTGAGCTGCTCTGTGCTCAGATCATCAAAGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2002082 True 1827 lncRNA 0.43 2 50375607 50415360

Neighbor

gene id symbol gene type direction distance location
LOC110500641 LOC106608640 coding upstream 19890 50297060 ~ 50355717 (+)
spata6l LOC106608638 coding upstream 105056 50263911 ~ 50270551 (+)
LOC110500640 LOC106608639 coding upstream 111853 50257673 ~ 50263754 (+)
LOC110500637 LOC106608635 coding upstream 135679 50230206 ~ 50239928 (+)
LOC110500635 LOC106608610 coding upstream 151267 50217151 ~ 50224340 (+)
LOC110500645 LOC106608645 coding downstream 66482 50481842 ~ 50486101 (+)
LOC110500647 NA coding downstream 73768 50489128 ~ 50494517 (+)
LOC110500651 LOC106608649 coding downstream 89878 50505238 ~ 50508101 (+)
LOC110500882 NA coding downstream 103658 50519018 ~ 50530191 (+)
LOC110500656 LOC106608653 coding downstream 147541 50562901 ~ 50578867 (+)
G1748517 NA non-coding upstream 17515 50357375 ~ 50358092 (+)
G1748499 NA non-coding upstream 98235 50276716 ~ 50277372 (+)
G1748486 LOC106608637 non-coding upstream 123041 50247456 ~ 50252566 (+)
G1748484 NA non-coding upstream 128402 50244580 ~ 50247205 (+)
G1748480 NA non-coding upstream 145832 50229311 ~ 50229775 (+)
G1748657 NA non-coding downstream 118649 50534009 ~ 50536926 (+)
G1748679 NA non-coding downstream 153904 50569264 ~ 50570060 (+)
G1748685 NA non-coding downstream 171782 50587142 ~ 50587464 (+)
LOC110500658 LOC106608695 non-coding downstream 176732 50592046 ~ 50598188 (+)
G1748703 NA non-coding downstream 202067 50617427 ~ 50617656 (+)
LOC110500625 cj011 other upstream 766027 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 928981 49445839 ~ 49446626 (+)
G1747255 NA other upstream 1397849 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 2011681 48325100 ~ 48363926 (+)
G1746210 NA other upstream 2280488 48094767 ~ 48095119 (+)
LOC110500883 LOC106577571 other downstream 183550 50598799 ~ 50615280 (+)
LOC110500674 dulda other downstream 701085 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 718729 51134089 ~ 51142008 (+)
G1749651 NA other downstream 947326 51362686 ~ 51363380 (+)
G1749650 NA other downstream 1003609 51418969 ~ 51450475 (+)

Expression


Co-expression Network