G1748657


Basic Information

Item Value
gene id G1748657
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50534009 ~ 50536926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2002205
GATACATTTgataatttatttttttacagagaGAGACCTGCTTCACCTCACCACATTGCTTTCCATGTCTTACATGAagaggtacagtgtgtgtgtgggtgtattacagtgtgtgtgtgtaagtctgtCGGTGGGTTGGCATTATGTCTGATGTTAGTGTGTTGGCAATGGCACATGGCAGTATAGATAGTGTTTGATAATGTGTCATTCAGTTCTCAACTCCAGGCCCCGGAGGGCCACAGGACTGCTGGTTTTCATTCATTTCAATTACATTATACAGTAGCTGGGGTCATCAGGGGCACTTTAGCTTAGTCTAACGCTTTGTCCCATTAGACAGCCTGGGACCTGCCTGTCCTCTCCTATTGGCCATGGAGTCTGAGCGGAGTGTCTGGTTGGCTGCTCCTGAGGCAGTGGCAGGGCTAGGATTgtTATGCCTCTGCCCCGTCCAGAGAAGACAGTGGTGAGTCCTTTAGAGACAGAGACGTGCTTCATAGGACGGGACTGAGATTGACACAGCTCAGTTAGCAGCTCaggactggagagagacaggagagtagtgcaacctacacacacacacacacacacacacacacacacgttattgtACACCACTATGTTACACACAGCAGCTCGACTGGACACATACACATTACTACTGTACTAGTATACcataactacactacactactactagaAGTATACTATAACTACACAACTACTACTAGTATAATATAACGACACTACGACAACTAGTAtactataactacactacagctaGTATACTATAATGACAAAAGTACAACTAGTATACTATAACGACACTACTACTTGTATACTATAACGATTCCTTATATTAAGTAAACCAGACGgcatcattttcttgttttttaaatttatggatagccagggacacactccaacacttagacataatttacaaacagccagatcagaggcaatagggatgaccatggatgttctcttgataagtgcatgaattggacaattttcctgtccagcgaagcattcaaaatgtaacaagtacttttgcgTTTCAGAGAAAATAtatggaataaaaagtacattattttctttaggaatgtagtgaagtaaaagtagtcaaaaatataaacagtaaagtacagataccccccaaaaatacttaAGTCGTACTTTCACGTATTTttaattaagtactttacaccactgctactagTATACTataactacactactactactactggtataccataactacactactactactagtatatGATAACTCCGTTACTAATACTAGTGTACTataactacactactactactagtatgctATAACTACAATACTACCACTAGTATACAATAACTGAACTATTGCTAGTATACTACaatgacactactactactactactaatagtagtATATTATAACTACACTACTGGTATACTACTGGTATACAACAACTAAACTACTCCTAGTACACTAACTACACTACCACTAGTATACCATAACTACACTACTCTAGTAGTATACTATAACTGCTCAACTACTACAATAGTATACTATAactacactactactggtagTATACTATAACTACACTAATAATACTAGTATACTataactacactactacacacattCTATAACtacactatcactactactagtACACTATAACTACACTTCTACTAGTATACTATaactaaactactactactagtatactATAACTGCACTCCTACATGTATACTATAACTACACTGCTACTAGTATACAGTAACGGCACTACTACTAGTATAAtataccaacactactactagtaTACTATAACGACATTACTACTAGTAGTAATATACTATAATGACACTGCTACCAGCAGTATACTATAATGGCACTACTACTGTTAGTATACTGTAACTAGTCTACTAGTCAGTGGTGGAAAacgtacccaattgtcatacttgagtaaaagtaaagataccttagaAAATGACTAAGGTATCTttgtgaaagtcacccagtaaaatactacttgattaaaagtctaaaagtatttggttttaaatatcctAAATTATCAAAACTAAATGTAattgttaaaatatacttaagtattgaaagtaaaagcataaatcatttcaaattccttatattaagcaaaccagacggcaccattttcttgtttttttatttacggatagccaagggcacactccaacactcagacatcatttacaaaataagcaTTT

Function

NR:

description
espin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2002205 True 2256 lncRNA 0.36 2 50534009 50536926

Neighbor

gene id symbol gene type direction distance location
LOC110500882 NA coding upstream 3818 50519018 ~ 50530191 (+)
LOC110500651 LOC106608649 coding upstream 25908 50505238 ~ 50508101 (+)
LOC110500647 NA coding upstream 39492 50489128 ~ 50494517 (+)
LOC110500645 LOC106608645 coding upstream 47908 50481842 ~ 50486101 (+)
LOC110500641 LOC106608640 coding upstream 178292 50297060 ~ 50355717 (+)
LOC110500656 LOC106608653 coding downstream 25975 50562901 ~ 50578867 (+)
LOC110500658 LOC106608695 coding downstream 55120 50592046 ~ 50598188 (+)
trnaa-cgc-5 NA coding downstream 61617 50598543 ~ 50598614 (+)
LOC110500883 LOC106577571 coding downstream 61873 50598799 ~ 50615280 (+)
msantd1 LOC106608655 coding downstream 84357 50621283 ~ 50624034 (+)
G1748560 NA non-coding upstream 118649 50375607 ~ 50415360 (+)
G1748578 NA non-coding upstream 126280 50402621 ~ 50407729 (+)
G1748517 NA non-coding upstream 175917 50357375 ~ 50358092 (+)
G1748499 NA non-coding upstream 256637 50276716 ~ 50277372 (+)
G1748486 LOC106608637 non-coding upstream 281443 50247456 ~ 50252566 (+)
G1748679 NA non-coding downstream 32338 50569264 ~ 50570060 (+)
G1748685 NA non-coding downstream 50216 50587142 ~ 50587464 (+)
G1748703 NA non-coding downstream 80501 50617427 ~ 50617656 (+)
G1748704 NA non-coding downstream 81360 50618286 ~ 50618774 (+)
LOC110500625 cj011 other upstream 924429 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 1087383 49445839 ~ 49446626 (+)
G1747255 NA other upstream 1556251 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 2170083 48325100 ~ 48363926 (+)
G1746210 NA other upstream 2438890 48094767 ~ 48095119 (+)
LOC110500674 dulda other downstream 579519 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 597163 51134089 ~ 51142008 (+)
G1749651 NA other downstream 825760 51362686 ~ 51363380 (+)
G1749650 NA other downstream 882043 51418969 ~ 51450475 (+)

Expression


Co-expression Network