G1748735


Basic Information

Item Value
gene id G1748735
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 50769722 ~ 50770727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2002294
acaggtgtgccttgttaaacgttaatttgtggaatttatttccctcttatggcaagaacagctcaaataagcaaagagaaatgacagtccaacattactttaagacatgaaggtcagtcaatctggaaaatttcaagaacttttcaagtttcatcaaatgacaccaataagaagaagagacttgcttggcccaaGACATTAGACTGGTCGAAATCTGTCCttctctgatgagtccaaattttagatttttgctttcaaccgctgtgtctttgtgagactcagagtaggTGAGAGAATGATCTCTGGATGTGTGGttgccaccgtgaagcatggaggtgtgatggtgttttgctggtgacactgtctgtgatttatttagaattcaaggcacacttaaccaacatgtcTACCACCGCATTCTTTAGCgctatgccatcccatctggtttgcgcttagtgggactattatttgtttttcaacaggacaatgacccaacacacctcactgcagtgtaagggctatttgaccaagaagtagagtgattgagtgctgcatcagattacctggcttccacaatcattcgacctcaaaccaattgagatggtttgggatgagttggactgcatagtgaaggaaaagcaggcaacaagtgctcagcatatgtgggaactccttcaagactgtagaAAAAGGCattcctggtgaagctggttgagagaatgccaagcatgtggaaagctgtcatcaaggcaaagagtggctactttaaagaattaAAActactggttactacatgattccatatgtgttatttcatagttttgatgtctttactattattctacaatgtagaaaatagtaaaagtaaagaaaagcctttgaatgagtaggtgtgtccaaacttttgactggtactgtatatttctcGAGTATCTGTAAATACTTTTCCCTGTTTTAATTCTAGTCATCTTGGTTTTCTCATACATTATACATTTGAAGATATGTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2002294 True 1006 lncRNA 0.39 1 50769722 50770727

Neighbor

gene id symbol gene type direction distance location
LOC110500662 LOC106608658 coding upstream 2289 50734723 ~ 50767433 (+)
LOC110500661 hgfa coding upstream 36749 50711496 ~ 50732973 (+)
LOC110500660 LOC106608656 coding upstream 62143 50629412 ~ 50707579 (+)
msantd1 LOC106608655 coding upstream 145688 50621283 ~ 50624034 (+)
LOC110500883 LOC106577571 coding upstream 154442 50598799 ~ 50615280 (+)
LOC110500663 LOC106608696 coding downstream 71682 50842409 ~ 50844632 (+)
LOC110500664 LOC106608659 coding downstream 132059 50902786 ~ 50905298 (+)
LOC110500665 LOC106608660 coding downstream 135753 50906480 ~ 50909607 (+)
LOC110500669 LOC106608664 coding downstream 282659 51053386 ~ 51067912 (+)
LOC110500672 NA coding downstream 329273 51100000 ~ 51101654 (+)
G1748728 NA non-coding upstream 58527 50710930 ~ 50711195 (+)
G1748706 NA non-coding upstream 148705 50620786 ~ 50621017 (+)
G1748704 NA non-coding upstream 150948 50618286 ~ 50618774 (+)
G1748703 NA non-coding upstream 152066 50617427 ~ 50617656 (+)
LOC110500658 LOC106608695 non-coding upstream 173182 50592046 ~ 50598188 (+)
G1749267 NA non-coding downstream 5648 50776375 ~ 50776590 (+)
G1749270 NA non-coding downstream 55085 50825812 ~ 50912133 (+)
G1749434 LOC106608661 non-coding downstream 211521 50982248 ~ 50986719 (+)
G1749436 LOC106608661 non-coding downstream 220015 50990742 ~ 50993138 (+)
G1749470 NA non-coding downstream 264843 51035570 ~ 51036032 (+)
LOC110500625 cj011 other upstream 1160142 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 1323096 49445839 ~ 49446626 (+)
G1747255 NA other upstream 1791964 48977326 ~ 48977758 (+)
G1746471 LOC106608612 other upstream 2405796 48325100 ~ 48363926 (+)
LOC110500674 dulda other downstream 345718 51116362 ~ 51133346 (+)
gbrap gbrap other downstream 363362 51134089 ~ 51142008 (+)
G1749651 NA other downstream 591959 51362686 ~ 51363380 (+)
G1749650 NA other downstream 648242 51418969 ~ 51450475 (+)
G1750012 NA other downstream 1300873 52071600 ~ 52079002 (+)

Expression


Co-expression Network