G1749584


Basic Information

Item Value
gene id G1749584
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51243605 ~ 51246308 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2003252
CTGACCATCCAGTTCCACACCGAGTTAGGGATGTATCTTGCAGTGCCTGCCTTCCAGGTGCGCTGCTTGGCTGACAGCCACAGATGAGCAATAACACCCTGAAAataggaacacaggaacacaaTTGGCATTAAGAGTTTCATTTTCACCTTTTTACTGTGACTTGAAATGTACTGATCAAAGTGGCACAGACCAGATCAACAGATTAAAATGTATACATGTTCCGGTCAACCCTGACCAACAAGGCAGATCACACCAACAGAATACACTATGCTGatacagaggagaagtaggacgTAAATGACATGCTAGACTGGCAGTTCTCTCGACATTATGTTTTAGTGCACTATATCAAATGACCTGGGGCCTTATCACAACAAGGCGAAGGTCCGACGGACGTGAAGTTTAGACAAGACAACGGTCAAATCATTCACTGTATGGGTGATGAGACAGATAGGGCTGTATGGAGTTTGGTTTTGGGATGGCTGTCTTGTGATGTTCATTTAAAATGTTTTGTATTGTAACATATCCCAATATTATTACTAgatatttaattggaaaaaaaacaaacactttgATATGGTGGTttaaatgtcatttaaaaaagTACCTCTTATCTAATCCATCATGATCTTGCCAAAGAACTTTACTTTTGCTCCTCATTTCCCTACCATTATGAATAAAGAAATAGTACCTTGAGCAAATATTATGAAACAGAAACATAGATTAAATAGATTATGATTGGTTGAGTCCTAGATTTCCTGTGGACCAGGTAGGTAGCTAATCAGTTCTATGTGATAAGCCCTACAGATTCTGGTGGAGCATTGATCTGTGTCATGCTTCCACCACAAACCTTGTCACCATTTGCACACCTCTAACACTCTGTAGCCCACCCAGTTATGATTTTACAGCTTTATTAGTGGAGCGGTATATCACTGGTTATGTAAGCTGCTTTCATAACACTTTAGGTAAGTAGGTGGGTAGAAATCAAaccaagctttatttatacagcgcatttcagacatggaatgtcTTTATccgaaaaaaataaataaacaatgaaaataaaagcgGAAATATTTATGACACGAAcatttttagctttgcttttccttaggaTGTGGTTTTTAGTTGTTCCATTTgtcatttagtttttttttgtcttaagaTCTCTTAACTTTGTCCACAGTTCCAGCCCCCCTCGGGTTCTCTGGCAGACTATTCCAGAGGCTGgaggcataataactaaaggctgcctctccatacctctgtcacaccctgattttTCACCTGTTTTTGTGCTTGTTTCCAACTCCCTCCAGGCGTCGCCCATTTGCCCCATTATCCCATGTGTATTATACCTGCCTTCTGTTTGTCTgctgccagttcgtcttgtctcgtcaaACCTACCAGTGTTTGACCTTACCCCATTTTCTTgttttcccagttttgaccattttgcctgccctgaccctgagcctgcctgccgttctgtacattgtgacactgccctggattaatggcctctgcctgccctgaccctgagcctgcctgccgttctgtacattgtgacactgccctggattaatgacctctgcctgccctgaccctgatcctgcctgACGTTCTGTACAttgtgacactgccctggattaatgacctctgcctgccctgaccctgagcctgcctgccgttctgtacattgtgacactgccctggattaatgacctctgcctgccctgaccctgagcctgcctgccgttctgtacattgtgacactgccctggattaatgacctctgcctgccctgaccctgcctgccgttctgtacattgtgacactgccctggattaatgacctctgcctgccctgaccctgagcctgcctgccgttctgtaccttgtgacacTGCTCTAGATTAATGACCTCTACCTTCCCTTGACCTGTTTGTCtgccccctgtttttgtaataaacctGTGTTActtcgaactgtctgcatctgggtcttatcctgaggtctgataCCCTTGGttctaggctttgggatagttaaaaggccagtgccagaggacctgagggacctactgggtacataacttaaaagcatgtctgacatgtattggggtgcacaatcgtagattgatttaaaaaccaatagaataaTTGTAAAATTAATTCTAAAAACTCACAGACAGCCAGTCAGAGATTTTAAAAccagtgtaatgtgtgctctctgtctggtcttggtcagtacccatgctgcagcattctgtatgttttgtagttgaccaatggctttcttgggtagatcAGACAGGAGAGCATCACAGTATTtaagcctgcttgtaataaaagcatggatgagtctctctgtctcagcctgagagagaaaagGCCACACCTTGGCAATGTACTTCAGGTGGTAAAAAcctattttggtcacattcctaatgtgtgacTCGAAATTTAGTacagaatctaaaataacacctAGGTTTTTAACCTGGTGGAGGCATGCATATTTGAGCATGTATAGACTATATAATTGTATTGCTGATCCTCAATCAACAGAAACGTGAATGTTTAAGAGGGAACATTGCTAACTAATTATAATGGATTCAGGTGAGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106632435

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2003252 True 2629 lncRNA 0.43 2 51243605 51246308

Neighbor

gene id symbol gene type direction distance location
LOC110500679 LOC106608674 coding upstream 12785 51217984 ~ 51230820 (+)
LOC110500680 LOC106608673 coding upstream 26676 51202043 ~ 51216929 (+)
LOC110500677 LOC106608671 coding upstream 69418 51169316 ~ 51174187 (+)
LOC110500675 LOC106608669 coding upstream 89835 51145280 ~ 51153770 (+)
gbrap gbrap coding upstream 101708 51134089 ~ 51142008 (+)
LOC110500685 NA coding downstream 52571 51298879 ~ 51301196 (+)
LOC110500686 LOC106608678 coding downstream 70506 51316814 ~ 51332192 (+)
LOC110500687 LOC106608680 coding downstream 105005 51350884 ~ 51361534 (+)
LOC110500885 LOC106608683 coding downstream 124413 51370721 ~ 51413247 (+)
LOC110500691 LOC106608684 coding downstream 210920 51457228 ~ 51485888 (+)
G1749582 NA non-coding upstream 2475 51240866 ~ 51241130 (+)
G1749580 NA non-coding upstream 4002 51239271 ~ 51239603 (+)
G1749567 NA non-coding upstream 42675 51200660 ~ 51200930 (+)
G1749540 NA non-coding upstream 76891 51166349 ~ 51166714 (+)
G1749536 NA non-coding upstream 99599 51143718 ~ 51144006 (+)
G1749626 NA non-coding downstream 59051 51305359 ~ 51305617 (+)
G1749627 NA non-coding downstream 59505 51305813 ~ 51306034 (+)
G1749628 NA non-coding downstream 59833 51306141 ~ 51309648 (+)
G1749634 NA non-coding downstream 68013 51314321 ~ 51314812 (+)
LOC110500674 dulda other upstream 110267 51116362 ~ 51133346 (+)
LOC110500883 LOC106577571 other upstream 640328 50598799 ~ 50615280 (+)
LOC110500625 cj011 other upstream 1634025 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 1796979 49445839 ~ 49446626 (+)
G1749651 NA other downstream 116378 51362686 ~ 51363380 (+)
G1749650 NA other downstream 172661 51418969 ~ 51450475 (+)
G1750012 NA other downstream 825292 52071600 ~ 52079002 (+)
G1750030 LOC106608688 other downstream 848401 52094709 ~ 52095105 (+)
G1750050 NA other downstream 944892 52191200 ~ 52197007 (+)

Expression


Co-expression Network