G1749628


Basic Information

Item Value
gene id G1749628
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51306141 ~ 51309648 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2003310
CCATATTAAACTAAACTAAATCACTGTCCACTATTCACCTCTGTATTAAACTAAATCACTGTCCACTAGTCACCTCCATATTAAACTAAACTAAATCACTGTCCACTATTAACCTTAGTATTAAACTAAACTAAATCCCTTTACACTAGTCACCTTTGTATTAAACTAAACTAAATCCCTATCCACCTCCATATTAAACTAAACTAAATCACTGTCCACTATTCACCTCTGTATTAAACTAAACTAAATCCCTATCCACTAGTCACCTCTCTATTAAAATAAATCCCTATCCACCTCCATATTAAACTAAACTAAATCACTGTCCACTATTCACATCCATATTAAACTAAACTAAATCCCTTTCCACTAGTCACCTATGTATTAAACTAAACTAAATCCCTATCCACTAGTCACCTCTGTATTAAACTAAACT
>TU2003309
CCACTATTCACCTCCGTATTAAACTAAACTAAATCACTGTCCACTATTCACCTCTGTATTAATCTAAATCACTGTCCACTATTCACCTCTGTATTAAACTAAATCACTATCCACTAGTCACCTCTGTATTAAACTAAATCCCTATCCACTATTCACCTCCGTATTAAACTAAATCACTGTCCACTAGTCACCTCTGTATTAAACTAAATCACTGTCCACTATTCACCTCTGTATTAAACTAAATCCCTATCCACTAGTCACCTCTGTATTAAACGAAATCCCTATACACCTCCATATTAAACTAAACTAAATCACTGTCCACTATTAACCTTAGTATTAAACTAAACTAAATCCCTTTACACTAGTCACCTTTGTATTAAACTAAACTAAATCCCTATCCACCTCCATATTAAACTAAACTAAATCACTGTCCACTATTCACCTCTGTATTAAACTAAACTAAATCCCTATCCACTAGTCACCTCTCTATTAAAATAAATCCCTATCCACCTCCATATTAAACTAAACTAAATCACTGTCCACTATTCACATCCATATTAAACTAAACTAAATCCCTTTCCACTAGTCACCTATGTATTAAACTAAACTAAATCCCTATCCACTAGTCACCTCTGTATTAAACTAAACT
>TU2003311
CCACTATTCACCTCCGTATTAAACTAAACTAAATCACTGTCCACTATTCACCTCTGTATTAATCTAAATCACTGTCCACTATTCACCTCTGTATTAAACTAAATCACTATCCACTAGTCACCTCTGTATTAAACTAAATCCCTATCCACTATTCACCTCCGTATTAAACTAAATCACTGTCCACTAGTCACCTCTGTATTAAACTAAATCACTGTCCACTATTCACATCCGTATTAAACTAAATCACTGTCCACTAGTCACCTCTGTATTAAACTAAATCACTGTCCACTATTCACCTCCATATTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2003310 False 433 lncRNA 0.32 3 51306141 51308676
TU2003309 False 649 lncRNA 0.34 2 51307948 51308676
TU2003311 True 307 lncRNA 0.36 2 51307948 51309648

Neighbor

gene id symbol gene type direction distance location
LOC110500685 NA coding upstream 4945 51298879 ~ 51301196 (+)
LOC110500679 LOC106608674 coding upstream 75321 51217984 ~ 51230820 (+)
LOC110500680 LOC106608673 coding upstream 89212 51202043 ~ 51216929 (+)
LOC110500677 LOC106608671 coding upstream 131954 51169316 ~ 51174187 (+)
LOC110500675 LOC106608669 coding upstream 152371 51145280 ~ 51153770 (+)
LOC110500686 LOC106608678 coding downstream 7166 51316814 ~ 51332192 (+)
LOC110500687 LOC106608680 coding downstream 41665 51350884 ~ 51361534 (+)
LOC110500885 LOC106608683 coding downstream 61073 51370721 ~ 51413247 (+)
LOC110500691 LOC106608684 coding downstream 147580 51457228 ~ 51485888 (+)
LOC110500694 LOC106608686 coding downstream 191950 51501598 ~ 51507145 (+)
G1749627 NA non-coding upstream 107 51305813 ~ 51306034 (+)
G1749626 NA non-coding upstream 524 51305359 ~ 51305617 (+)
G1749584 NA non-coding upstream 59833 51243605 ~ 51246308 (+)
G1749582 NA non-coding upstream 65011 51240866 ~ 51241130 (+)
G1749634 NA non-coding downstream 4673 51314321 ~ 51314812 (+)
G1749640 NA non-coding downstream 28020 51337668 ~ 51338090 (+)
G1749641 NA non-coding downstream 28695 51338343 ~ 51338700 (+)
G1749642 NA non-coding downstream 29870 51339518 ~ 51339907 (+)
G1749644 NA non-coding downstream 31719 51341367 ~ 51341593 (+)
gbrap gbrap other upstream 164133 51134089 ~ 51142008 (+)
LOC110500674 dulda other upstream 172803 51116362 ~ 51133346 (+)
LOC110500883 LOC106577571 other upstream 702864 50598799 ~ 50615280 (+)
LOC110500625 cj011 other upstream 1696561 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 1859515 49445839 ~ 49446626 (+)
G1749651 NA other downstream 53038 51362686 ~ 51363380 (+)
G1749650 NA other downstream 109321 51418969 ~ 51450475 (+)
G1750012 NA other downstream 761952 52071600 ~ 52079002 (+)
G1750030 LOC106608688 other downstream 785061 52094709 ~ 52095105 (+)
G1750050 NA other downstream 881552 52191200 ~ 52197007 (+)

Expression


Co-expression Network