G1749642


Basic Information

Item Value
gene id G1749642
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51339518 ~ 51339907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2003325
GGAGCTTTCCAGTAATACGCTGACGGGAAAAATGTTAATCAGGGCATTTGACTTGTACTGCAGGAGTAGAACAGTGCTGATCTGGAAGTGGTCTCAACTGCCAATCACTAAAGCAATTTACAGATTTATTTTTAGGTGCACTAAAGAAGTAATCTCATATTTTGCAAAAACTTGGGGATGTCAAACAGAGCAAGATGTCGGGACACTGTGACGTAAAACCAATCAGACTAAATATTTTGACTCCTTCGTCTGGTGATAGCTTTCCCGTTGCAGggcatttgattttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacagcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtacct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2003325 True 390 lncRNA 0.41 1 51339518 51339907

Neighbor

gene id symbol gene type direction distance location
LOC110500686 LOC106608678 coding upstream 7326 51316814 ~ 51332192 (+)
LOC110500685 NA coding upstream 38322 51298879 ~ 51301196 (+)
LOC110500679 LOC106608674 coding upstream 108698 51217984 ~ 51230820 (+)
LOC110500680 LOC106608673 coding upstream 122589 51202043 ~ 51216929 (+)
LOC110500677 LOC106608671 coding upstream 165331 51169316 ~ 51174187 (+)
LOC110500687 LOC106608680 coding downstream 11406 51350884 ~ 51361534 (+)
LOC110500885 LOC106608683 coding downstream 30814 51370721 ~ 51413247 (+)
LOC110500691 LOC106608684 coding downstream 117321 51457228 ~ 51485888 (+)
LOC110500694 LOC106608686 coding downstream 161691 51501598 ~ 51507145 (+)
LOC110500695 LOC106608687 coding downstream 169376 51509283 ~ 51554830 (+)
G1749641 NA non-coding upstream 818 51338343 ~ 51338700 (+)
G1749640 NA non-coding upstream 1428 51337668 ~ 51338090 (+)
G1749634 NA non-coding upstream 24706 51314321 ~ 51314812 (+)
G1749628 NA non-coding upstream 29870 51306141 ~ 51309648 (+)
G1749627 NA non-coding upstream 33484 51305813 ~ 51306034 (+)
G1749644 NA non-coding downstream 1460 51341367 ~ 51341593 (+)
G1749646 NA non-coding downstream 2579 51342486 ~ 51343013 (+)
G1749659 NA non-coding downstream 25502 51365409 ~ 51365714 (+)
G1749674 NA non-coding downstream 44438 51384345 ~ 51385146 (+)
gbrap gbrap other upstream 197510 51134089 ~ 51142008 (+)
LOC110500674 dulda other upstream 206180 51116362 ~ 51133346 (+)
LOC110500883 LOC106577571 other upstream 736241 50598799 ~ 50615280 (+)
LOC110500625 cj011 other upstream 1729938 49606099 ~ 49609714 (+)
G1747814 LOC106606817 other upstream 1892892 49445839 ~ 49446626 (+)
G1749651 NA other downstream 22779 51362686 ~ 51363380 (+)
G1749650 NA other downstream 79062 51418969 ~ 51450475 (+)
G1750012 NA other downstream 731693 52071600 ~ 52079002 (+)
G1750030 LOC106608688 other downstream 754802 52094709 ~ 52095105 (+)
G1750050 NA other downstream 851293 52191200 ~ 52197007 (+)

Expression


Co-expression Network