LOC110501777 (LOC106582279)


Basic Information

Item Value
gene id LOC110501777
gene name LOC106582279
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 32817077 ~ 32846173 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579600.2
TGGCGATGTAAGCAGGGTCACAGATAGAACAGTGATCTTTGGCTAAACTAAAGGCTAAAGCTAGCAAGTAACACACGAGTAAAGTGGGTTTCGCCGTCCTAATGAGGAGTAATAAGATACATACCTATCAATAACATAGTGGTGGAGCGGCATAGTTATCTATGTGAGTTGTGATTATGTAGATAGCGATGAATGAAACAGGATTTGAATCACGACTGTCGCTGGACATATGATGGCGACGGAGCTGAGACGCTTTTGGAAGCTGTTTGGGTCACTGAGACGTATTTTCACCTTCTCACTTCTATTTTTGTTTGTGCATTGTCATACGTGTAAACATCAAGTCCCATCTCTGTCGGAGGTTGTCCATAAAGTATATCTGAAGTCGGAAAGATTAACCAAAAGAAGCTCTGATCAACAATTAAAGATACAAATAATTTATGACTCAAGTGTGGACAAGTTAACCTCAGATAAAAGAAGACTTGTGAAGGATAAACTTTTTCCACAAGCAATTGATTATTTACAGAAGGTTTTTCAGGTTCGCCGGAAATCAGGGCCTATACTACTCAGCAGACAATGTGTGACCAATCAGTATCTGAGGAAGAAAGATGACCCTCACCGCTACTGCCAGGGATCATGTGCAGACATCACAAAGTGTGGACCCGTCATTGTTCCTGAGCATCATCTGCAGCAATGCAAGGTGTGCAGCGAGACCGGGAGGTCGTGTGGCTCAGCAGGAGCTCCGGATGGGAAGGGGGTGGAAGGGGCTGATTTTGTCCTCTACGTCAGCGGGGTGACTACAGAACGCTGTGGACAGGAGAACATTGTGGCCTATGCTGCATACTGTCAGCTGGAGTCTGAGCTGGACAGGCCCATTGCTGGATATGCCAACCTGTGCCCCAATATGATATCCACCCAACCTCAGGAGTTTGAGAGCATGCTGTCAACTGTCAAACACGAAATCATACATGCCTTGGGTTTTTCAGCAGGGCTGTTTGCGTTTTATCATGATTATAATGGTAAGCCATTGACACCTCGGTTTGCAAGTGGACTACCAGCATTCAACGAGAGTTTAGGCCTGTATCAATGGAGTGATGCTGTGATACGTAGAGTGACTCGATTATGGGACATCCGTGGTGGAGTGATGGTCCGTCATGAAGTGCATCTTCTAGTGACGCCGCGTGTTGTGGAGGAAGCGAGGAGACACTTTGGCTGTCCCATTCTGGAGGGTATGGAGCTGGAGAACCAGGGAGGGATGGGTACTGAGCTGAACCACTGGGAGAAGAGGCTACTAGAGAACGAAGCAATGACTGGATCGCACACACAAAACAGAGTGTTTTCTAGGATCACCTTGGCCATCATGGAAGACACAGGTTGGTACAGAGCCAACTACAGCATGgcagagaggctggactggggcaAGGGCCTGGGCTGTGACTTTGTGATGAAAAGCTGTAAGTTCTGGATTGAAAGGCAACGTCAGAGTCGTAAAGTGGTGACCCCTTACTGTGACACGGTGCGTGCCACACCCCTCCAGCTAACCTGCAGGCAGGACCAGCTGGCTGTGGCTGTCTGCAACCTGCAGAAGTACCCTCAGGACATACCCCTGGACTACCAGTACTTTGACCATATCCCTGATGTCTCTGTGAGGGACATTGCCTCCTACGGTGGAGCTGTGGAGATCGCTGACTACTGTCCCTTCAGCCAGGAATTCAGCTGGCACCTGAGTGGAGAGTACCAACGCAATTCCTACTGCAGGGTCCAGGAGAACCAACCCGATTGGTGGAGGAACTATGGCGCTGAGCAGTATGGTCCAGACTCTGTTTGTTTGTACCAGAAGACATCCTTCATCATGGAGCAGTGTACCAGGCGCATGACCTACCCTGACTGGGGAAGTGGTTGTTATAAGATGTCTTGCTCTACCCAGGGTCTGACAGTATGGGTGCAGGATACTGAGTTTCAGTGTGTGCATACCGGTCAGCTGCTGAGAGTTAGTGTGCGTGTTAATGACTGGGTCTACAACGGGGTTCTCGTCTGTCCTGCCTGCTCAGACTTCTGTAGCGCCTGCCCTCTACCACAACAGCTGCCTCCCCTCAATAGTACCAGGAGAGTTCCTATTGACCCGTGCTCCAGTTCCTCCAGCTTAGTGGTAACTCTGTGGCTTCTATTGTTAAACCTCATCCCTCTGCTAGCTGGATTTATCCTGTGTGTGcggaactgactgactgactgtgtgactgactgactggttgggtgactgacttactgactgcAAGGTTCTGTGCCTGGGGCAGTGGACCagatgacaccctattccctacatagtgcactactgttgatgGGCTGGgcgggtggctggctggctgactgactgactgaaagtTTCTTTGCCTGAGGCTGAGGCCCagatgacaccctattccctacatggtgcactacttGTGATGGACCTATTGACTGGTTGGGTgggtggctgactgactgactggctgggtaggtgggtgggtggctgactgactgactgactggctgggtaggtgggtggctgactgactggctgaaagGTTCTCTGCCTGGGGCTGTGTATCTACCCAggcctaaagtagtgctctatagagaATAGGATTTGATCCTTGGAAAATCATCAAGGAAACGTCAGGACTGTTGTTTAGGAAACAATCACATTAGCCCCATCAAAGTCAGGGAAATGTGTGATACTTTTCAACAAATGTTATGTTGATTCTTAAAACAAAATGCAgtgaaaaatgtaaatgtattataaATGCCTGAAAGAAGGATTTGAACCACAATACCTTATCTGTCTAGTTTAAACACATTTCTACAACCTAGAACTTCTTTTAATGTTAGTTTTGAAACAGACAGGACAGTGGCCCATTGTCAATGACTGTTCATGAAATTGCTAGATATAATCAATGAAAACAATACTAACCTTTGTCCTTTGAAAGTCTGAGGATAGGAAAGGCATTGAAATTACAGTTGGAAAGTCTTAATGTTCTCTATAcgttttttctctcctctctctgaacaGTCTCCAATCCCAGTCATGGCACGGTTTGTGGCACATTAAGACAGTCCCAAGTGGCATCCTatttaaagggaatagggtgccaatagtgcactataaagggaatagggtgccatttgggatgcacacagggAGAACTCAAGAGTTTAGCTTCTCGATGTCCTCCTGACACACTACTTTGCCCTTTTAGGGCCGCTGTACTCCAGACAGTAGCATCAGAATACTGGGAAGGTGTGTGCCAAGTGCAGGCTACTATCAGAAAAGGGGAAAAGAAGCCATTGATTGCACTTTTTCTTTATCGAATTAATGAAGGAGATGCCAGTAAGCTGTAAGCTAAATCAGAAGAAGCCATACCTCAAGAGTAGCTAGCTGATCATGGTAAGGTGCCAGTGCTTCTTTATGAATTACCACCTATTCTAAAATGAATACTTTATTCCCCTCATCAGAACTGTAAAATGAGGATGTTCAGTTTCCTAGTGTTGTCGTGCAAGGTTTGCAACATTCTCagaccttacagtaaatgaaTCACCTACATTTTCATCAAGCCATTTTTTCAGTTAACATTTTATGACATGTCCAGTGATTCAACACTATTCAATGTAACAATGCAGTATTTCAATTCATTTTTACAGCAGATTGTTGTTAACGTGAAGTTCTTTCCTGGTGAAAGCTCCATATCTAGtgggatttattttatttaactaggcaagtcagttaagaacatattcttatttataatggcgtcctaccaaaaggcaaaaggcctcctgcggggacgggggctgggattcataaaaaaatata

Function

NR:

description
leishmanolysin-like peptidase

GO: NA

KEGG:

id description
K13539 LMLN; leishmanolysin-like peptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579600.2 True 3847 mRNA 0.46 17 32817077 32846173

Neighbor

gene id symbol gene type direction distance location
LOC110502125 LOC106582208 coding upstream 169 32811982 ~ 32816908 (+)
ttn.1 NA coding upstream 7556 32622987 ~ 32809521 (+)
LOC110501775 LOC106582275 coding upstream 209255 32431098 ~ 32607822 (+)
LOC110501768 LOC106582274 coding upstream 396957 32385412 ~ 32420120 (+)
LOC110501767 LOC106582273 coding upstream 442869 32317123 ~ 32374208 (+)
LOC110501779 LOC106582281 coding downstream 36742 32882915 ~ 32899018 (+)
LOC110501780 LOC106582282 coding downstream 58057 32904230 ~ 32908700 (+)
LOC110501782 LOC106582283 coding downstream 93404 32939577 ~ 32960500 (+)
LOC110501783 kansl1l coding downstream 118434 32964607 ~ 32993010 (+)
LOC110501784 LOC106582286 coding downstream 148727 32994900 ~ 33171144 (+)
G1800724 NA non-coding upstream 5727 32811080 ~ 32811350 (+)
G1799951 NA non-coding upstream 728519 32087155 ~ 32088558 (+)
G1799909 NA non-coding upstream 808281 32008504 ~ 32008796 (+)
G1799863 ub2e3 non-coding upstream 818763 31944586 ~ 31998314 (+)
G1800759 NA non-coding downstream 56753 32902926 ~ 32903150 (+)
G1800761 NA non-coding downstream 71896 32918069 ~ 32918687 (+)
G1800800 NA non-coding downstream 325066 33171239 ~ 33176016 (+)
G1800801 NA non-coding downstream 329901 33176074 ~ 33180752 (+)
G1801513 NA non-coding downstream 371114 33217287 ~ 33217504 (+)
G1798597 NA other upstream 1519658 31293552 ~ 31297419 (+)
G1798579 NA other upstream 1524872 31246481 ~ 31292205 (+)
G1798397 NA other upstream 1926010 30888661 ~ 30891067 (+)
G1798168 NA other upstream 2271123 30500656 ~ 30545954 (+)
G1800754 NA other downstream 64620 32910793 ~ 32914182 (+)
LOC110501795 LOC106596205 other downstream 2894266 35740427 ~ 35760519 (+)
G1804873 NA other downstream 3028389 35874562 ~ 35875452 (+)
G1805191 NA other downstream 3517423 36363596 ~ 36363930 (+)
LOC110501805 dirc2 other downstream 3588827 36435000 ~ 36520762 (+)

Expression


Co-expression Network