LOC110501887 (LOC106582419)


Basic Information

Item Value
gene id LOC110501887
gene name LOC106582419
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 41622821 ~ 41624796 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579741.2
TCAGTGTGTATGCAGCGACCGCAGGGATAGGACCGTTTATGCCGTGACGCACCATAGAGATCATAACATCAACCCAAATATAGCTTCGATAACTTTAACGTCGTTTATGGACGCAGTGTAGGCATATCTCAGGATTACCCGAACTCATCGACAACCTCTGGAGTGAATTTATTTATGTCTTTCGTTCCCGGAACGGAGGCTAGTTTTTTTGGACAGCCAATGTGCCAGAGGAGACGCGGGTGACACAAGTGCGCAGTGTTCACGGGAAAAACAGCAGAGAGACCGCAAGGAGGGTGTTTTCGTCCTTAAGCTGTTCGGTGAGTGCGAGGAATTTGACTGTCACAACATGGAATCTTAACTGGAGTGTGTGAGGAGAATTGTAATGACCACCGCGTTGCGTCCTACAGACGCGGACACTGTCCACCAATGCAGCTGAGGGCAAAACAAGGATCAACCAGCCAGAGCGCACGGCGGGCCTGTAAACACCTTGACATTAGGTTTGTTGATATTATTTGTGTGGATTCATCGAAGAGCCTATTGAATATTAAAACGCTATAGCCTATTAGGCCATCCGATAGGTCCTACATAAAGGAGCCAGGCGTTCCCCTCAACTGTTTCGAGAATGGGCAACAGTTTCTCCAACATATCTGCTTTCCAATCACTACACATTGTGATGCTGGGTTTGGATTCCGCTGGCAAAACGACTGTTCTCTATCGTCTGAAATTCAACGAATTCGTAAACACTGTGCCAACAATTGGATTCAACACTGAGAAAATCAAACTGAGTAATGGTACCGCGAAGGGGATCAGTTGTCACTTCTGGGACGTCGGAGGTCAGGAGAAGCTGCGGCCCCTGTGGAAATCCTACAGTCGGTGCACGGACGGCATCATTTATGTGGTGGACTCAGTGGACGTTGACCGGTTGGAGGAGGCTAAAACAGAACTGCATAAAGTCACAAAATTCGCAGAGAACCAGGGGACACCTCTTCTGGTGATAGCCAACAAGCAGGACCTGCCCAAATCTCTTCCAGTCGCAGACATTGAAAAACAGCTGGCTCTCCACGAGCTCACTCCATCCACCTCATACCACGTCCAACCTTGCTGCGCCATAATTGGCGAGGGACTTCACGAGGGTATGGACAAACTATATGAGATGATAGTAAAGCGGAGAAAATCTTTAAAGCAAAAGAAGAAACGATAACGACCGCCCATGTGTCGTAACGTATATGGACAATTACTGTATCTAAATGCTTTTCGGGTATGCCGATGTTGCCCTAAAATCACGTTTACTTTGCGGTGATTTTTGTATTTCCTTTCATTGGGTTATTGTCATAGTTGCTGACGCTATGAACCCTATTAGCTGAACTATGCTTTTGTACACAAGAGGGTGCCTCTGTGTGTGCAAGATATATACCAAGGTTAACCAAAAAAAAACTTGAAATTACTTTTATCACAGGAACAAAGCATTGATAAATGACAACGGGCTGGCCCGTTATTTGCTGCTGTACGGTGGATTCTAATTCTGTAGCTCAACATGTGATTTTGAAGTAGCATCCCATAGCCTACCTGTAGGCCTACTGTGATTGACTATGGACAGCCTATCGACACGTCTTCACGGAGTGCTTCTTCGGACATCAAGTTTGACTTTGTACGTTAAGTGGATGTGGGTCAAAATGAAATGGACCCTGTTCATTCAGAGAAAATAACAAACAGATGTCTGTGTTATGACAGTCTCACCTCAGTCTCTGTCTCGGTATATTAATGAAGACGCCAACAAGGCTTTGGAGTGTTGAATTAGCTTTTACTATGCGTGATGGACTAAAGATAACATTGCCTGCAACGTGGTCCACTACTTTGCACTTTTCATTTCCTAACAAAATAATAAAGTACTACACTGTATAGCAAAACACAGGCTGTTTATGTACCTGAAAGCCAAAATtgaagtattttttttatattaaaatatataaaatgcA

Function

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 4C

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579741.2 True 1976 mRNA 0.44 1 41622821 41624796

Neighbor

gene id symbol gene type direction distance location
LOC110502151 arl4c coding downstream 9685 41612562 ~ 41613136 (-)
LOC110501886 rhg15 coding downstream 99057 41447899 ~ 41523764 (-)
LOC118943638 NA coding downstream 175549 41439948 ~ 41447272 (-)
LOC110501883 LOC106582410 coding downstream 571334 40992915 ~ 41051487 (-)
LOC110501882 LOC106582411 coding downstream 634610 40942404 ~ 40988211 (-)
LOC110501888 LOC106582420 coding upstream 44100 41668896 ~ 41743824 (-)
LOC110502131 LOC106582415 coding upstream 140167 41764963 ~ 41767178 (-)
LOC110502152 LOC106582422 coding upstream 173658 41798454 ~ 41899740 (-)
LOC110501896 LOC106582434 coding upstream 967422 42592218 ~ 42603449 (-)
LOC110502155 psd12 coding upstream 979202 42603998 ~ 42605768 (-)
G1811025 NA non-coding downstream 32323 41589230 ~ 41590498 (-)
G1810940 NA non-coding downstream 169234 41449902 ~ 41453587 (-)
G1810926 NA non-coding downstream 191791 41430763 ~ 41431030 (-)
G1810912 NA non-coding downstream 211122 41411476 ~ 41411699 (-)
G1810911 NA non-coding downstream 212733 41409402 ~ 41410088 (-)
G1811165 NA non-coding upstream 17973 41642769 ~ 41642992 (-)
G1811169 NA non-coding upstream 21206 41646002 ~ 41646266 (-)
G1811240 NA non-coding upstream 139831 41764627 ~ 41764828 (-)
G1811279 NA non-coding upstream 167638 41792434 ~ 41792652 (-)
G1811414 NA non-coding upstream 267753 41892549 ~ 41892759 (-)
G1811042 NA other downstream 17590 41604974 ~ 41605231 (-)
LOC110501878 LOC106582406 other downstream 809434 40736648 ~ 40813437 (-)
G1808299 NA other downstream 2678291 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 3010534 38520872 ~ 38726596 (-)
G1812079 LOC106582433 other upstream 762026 42386822 ~ 42389273 (-)
G1812404 NA other upstream 1052461 42677257 ~ 42677760 (-)
LOC110502171 LOC106582464 other upstream 2885611 44473683 ~ 44553607 (-)
G1814480 NA other upstream 3048651 44673447 ~ 44673888 (-)

Expression


Co-expression Network