LOC110501891 (LOC106596153)


Basic Information

Item Value
gene id LOC110501891
gene name LOC106596153
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 46511637 ~ 46534272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021579746.2
actgctaggGGCTGTTCACTATGACgtaacgcggagtgcctggatacagcccttagcggTGGTATTTTGGCCATGTACCATAAACCGGAGGTGCCATATTgcaatacagtaccagtcaaatgttttgacacacctactcagtcaagggtttttctttattttcagaAGGAAGGCAGTGCTGGCAGCAGCGAAAACCATCTGGATGCAGACAAGGGTCTTTGCAGAGGAGCCTGATGGCGTGAGACTCCTGATGAGTTCAATGGCTAATGGACAGTTATATCAGATGATCAACAGGATATGTGAGGACCTGAGCTCGGGTGAGTGCAGGAGGCTCCTGTACCTGTGTGGATCCCTTGACACTGACAGGTGTGGTTCTGCTCATGTGAGAGAGGTGTTAAATTCCTGGCTGAGCAGAGGACAGGTGGATCAGCTGTACCTGGTGGAACTTCTGTTCAGACTGAGACGCTTTGATCTCCTGAAGAAAGAGTTTCACATCAGTAAACAGGAAGTGGATGGGATTCTGGGACAGAACCGAGCTTTGTCAGAGTACAGAGTGTTGATGTCTGATGTGAGTGAAGACATGGGGACAGAAGACCTGGAATCGCTCAAGTTTCTGCTGAGTGGTTCTTTATCCAGAGAGAGGCTGACCAGAGTCAAGAGTTTCCTGGATGTCATAGTTGAACTGGAGAAGCTGGACAGAGTGTCTTCTGAGAGGGTGGAGCTGATAGAAAAATGTCTGAGGGACATCAGCAGGGTTGACCTGGCCAGGAAGGTCAAAGGGTACCAGAACCTGACATCAGTTGGAACACCACAACATAGACCAGTGGTGATGATTCACCAGGCCCAGCAGCAGTGGATCAGGACTCCATCCAACCCCATGCCCACTGCCTCCCCTGTATCATGCCATTCAAGACAAGAGCAGTTCACACAGAACACTCCAGAGAACGAAAACATTGCAGAGCCTGAAAGAAAAAGGCTGTTCtaccagAGCCCAGTGGATGTTTACAGGCTCCAGTCAGACCCACGGGGTGAATGTCTCATCATAGACTGTGTTGGCAGTGATGGAGACATGTTGGAGGAGATGTTCAGCGGGCTCCAATTCAAGGTGACCCTGGTTAAGTGGCCGAGAGTGGGGGATACCCTGTCTCTTCTCAGGCAGGCTGCCCAACCGAGGCAGACCCAGGAAGTTGATGCCTTCGCCTGCTGCATCATCAGCCGTGGTACTGCTACCGACCTGCTGGCTACAGACTCTCACAGGCTCGGGGTGCGTCTTGACACGGTCCGACACCTCTTCACCCCTGACTACTGCCCCAGGCTGGCTGGCAAGCCCAAGCTGTTCTTCATCCAGACCTATAGTGTGTCAGGCCCCCAGGACTGCTCCTCCAGGCCCACGGGTCACCCTGCTCACAGGGAGGAGGATCTGGAGACAGACGGGTATGGGGAACCTCTCAATGTGGAGACAGTCCCCACCGACGCAGATGTCTTCTGGAGCCACTGTTGGACAGATGAGGGTCAGCTGGAGGAGAAGGACCATCGGTCTGTGTACCTGCAGGCCCTGAGAGAGGCAGTTCAGAGGAGGAGAACACATCTAGTGGATGTCCATACAGAGATGAACAGGGTGATCTTCGACCACAACAGAAGGAATCCAGGAGCCAGATACAACATTAATCTGAGACACACACTCAGGAAGAATCTCTACATGTTATAGATAGACATAATATAGTTTGCTCTACTGTATAACCACTGAGCAGTACTAGATTCTATTATACAGTATACAACAGCACCCTCTACTGGCAGCTTTTGATAACCACAACAGCACCCTCTACCGGTAGCTTTGATAACCACAACAGCACCCTCTACTGGCAGCTTTGCTAACCACAACAGCACCCTCTACTGACGACAACTGTCTTGCATCACATTGAGCAGCTAGCGAGGAAGTAGTGCAATCAAAACACATTCAGTATTTTATTACTATGTATTTATTCAAGACATGTTTTTCTTTTTACTGAAGGATGGATGAAGGATTTGAGAAAATAATGTGAATTCAGATCTGTGCATTTTAAAATGTAGACAAGCCTGATAAGTAGTAATAAAACATAGACCTAAAA
>XM_021579748.2
tgctaggGGCTGTTCACTATGACgtaacgcggagtgcctggatacagcccttagcggTGGTATTTTGGCCATGTACCATAAACCGGAGGTGCCATATTgcaatacagtaccagtcaaatgttttgacacacctactcagtcaagggtttttctttattttcagaAGGAAGGCAGTGCTGGCAGCAGCGAAAACCATCTGGATGCAGACAAGGGTCTTTGCAGAGGAGCCTGATGGCGTGGTAACTTTCACTTTCGTTTTGAGCAGGTTTTAGCATATATTTATCAGTGACTAATTCATTAAAATACTTTATGACCAACATTGAGTCAGTTCCGTGATCCCGCCACCCAGACCGAAATGAAAGTGTAATTTCCCGCGTGGGTGGTTACACCGAATTTGAAACGATCTTCCCCATTTGCGCTTTCCATTGCGTAATTCGCGAAACTTCAATTCGTCATTATAATCATCTAATTTCTCAGTCTTCATGCAACAGACCTCGCTGTGTCCTACTCTAAAAgAGACTCCTGATGAGTTCAATGGCTAATGGACAGTTATATCAGATGATCAACAGGATATGTGAGGACCTGAGCTCGGGTGAGTGCAGGAGGCTCCTGTACCTGTGTGGATCCCTTGACACTGACAGGTGTGGTTCTGCTCATGTGAGAGAGGTGTTAAATTCCTGGCTGAGCAGAGGACAGGTGGATCAGCTGTACCTGGTGGAACTTCTGTTCAGACTGAGACGCTTTGATCTCCTGAAGAAAGAGTTTCACATCAGTAAACAGGAAGTGGATGGGATTCTGGGACAGAACCGAGCTTTGTCAGAGTACAGAGTGTTGATGTCTGATGTGAGTGAAGACATGGGGACAGAAGACCTGGAATCGCTCAAGTTTCTGCTGAGTGGTTCTTTATCCAGAGAGAGGCTGACCAGAGTCAAGAGTTTCCTGGATGTCATAGTTGAACTGGAGAAGCTGGACAGAGTGTCTTCTGAGAGGGTGGAGCTGATAGAAAAATGTCTGAGGGACATCAGCAGGGTTGACCTGGCCAGGAAGGTCAAAGGGTACCAGAACCTGACATCAGTTGGAACACCACAACATAGACCAGTGGTGATGATTCACCAGGCCCAGCAGCAGTGGATCAGGACTCCATCCAACCCCATGCCCACTGCCTCCCCTGTATCATGCCATTCAAGACAAGAGCAGTTCACACAGAACACTCCAGAGAACGAAAACATTGCAGAGCCTGAAAGAAAAAGGCTGTTCtaccagAGCCCAGTGGATGTTTACAGGCTCCAGTCAGACCCACGGGGTGAATGTCTCATCATAGACTGTGTTGGCAGTGATGGAGACATGTTGGAGGAGATGTTCAGCGGGCTCCAATTCAAGGTGACCCTGGTTAAGTGGCCGAGAGTGGGGGATACCCTGTCTCTTCTCAGGCAGGCTGCCCAACCGAGGCAGACCCAGGAAGTTGATGCCTTCGCCTGCTGCATCATCAGCCGTGGTACTGCTACCGACCTGCTGGCTACAGACTCTCACAGGCTCGGGGTGCGTCTTGACACGGTCCGACACCTCTTCACCCCTGACTACTGCCCCAGGCTGGCTGGCAAGCCCAAGCTGTTCTTCATCCAGACCTATAGTGTGTCAGGCCCCCAGGACTGCTCCTCCAGGCCCACGGGTCACCCTGCTCACAGGGAGGAGGATCTGGAGACAGACGGGTATGGGGAACCTCTCAATGTGGAGACAGTCCCCACCGACGCAGATGTCTTCTGGAGCCACTGTTGGACAGATGAGGGTCAGCTGGAGGAGAAGGACCATCGGTCTGTGTACCTGCAGGCCCTGAGAGAGGCAGTTCAGAGGAGGAGAACACATCTAGTGGATGTCCATACAGAGATGAACAGGGTGATCTTCGACCACAACAGAAGGAATCCAGGAGCCAGATACAACATTAATCTGAGACACACACTCAGGAAGAATCTCTACATGTTATAGATAGACATAATATAGTTTGCTCTACTGTATAACCACTGAGCAGTACTAGATTCTATTATACAGTATACAACAGCACCCTCTACTGGCAGCTTTTGATAACCACAACAGCACCCTCTACCGGTAGCTTTGATAACCACAACAGCACCCTCTACTGGCAGCTTTGCTAACCACAACAGCACCCTCTACTGACGACAACTGTCTTGCATCACATTGAGCAGCTAGCGAGGAAGTAGTGCAATCAAAACACATTCAGTATTTTATTACTATGTATTTATTCAAGACATGTTTTTCTTTTTACTGAAGGATGGATGAAGGATTTGAGAAAATAATGTGAATTCAGATCTGTGCATTTTAAAATGTAGACAAGCCTGATAAGTAGTAATAAAACATAGACCTAAAA
>XM_036959433.1
TAGCATATATTTATCAGTGACTAATTCATTAAAATACTTTATGACCAACATTGAGTCAGTTCCGTGATCCCGCCACCCAGACCGAAATGAAAGTGTAATTTCCCGCGTGGGTGGTTACACCGAATTTGAAACGATCTTCCCCATTTGCGCTTTCCATTGCGTAATTCGCGAAACTTCAATTCGTCATTATAATCATCTAATTTCTCAGTCTTCATGCAACAGACCTCGCTGTGTCCTACTCTAAAAgGTACTAGTCTATTGAGCACAGCGTGAGACTGGGAACGACATAACTATGCAAAGACTCCTGATGAGTTCAATGGCTAATGGACAGTTATATCAGATGATCAACAGGATATGTGAGGACCTGAGCTCGGGTGAGTGCAGGAGGCTCCTGTACCTGTGTGGATCCCTTGACACTGACAGGTGTGGTTCTGCTCATGTGAGAGAGGTGTTAAATTCCTGGCTGAGCAGAGGACAGGTGGATCAGCTGTACCTGGTGGAACTTCTGTTCAGACTGAGACGCTTTGATCTCCTGAAGAAAGAGTTTCACATCAGTAAACAGGAAGTGGATGGGATTCTGGGACAGAACCGAGCTTTGTCAGAGTACAGAGTGTTGATGTCTGATGTGAGTGAAGACATGGGGACAGAAGACCTGGAATCGCTCAAGTTTCTGCTGAGTGGTTCTTTATCCAGAGAGAGGCTGACCAGAGTCAAGAGTTTCCTGGATGTCATAGTTGAACTGGAGAAGCTGGACAGAGTGTCTTCTGAGAGGGTGGAGCTGATAGAAAAATGTCTGAGGGACATCAGCAGGGTTGACCTGGCCAGGAAGGTCAAAGGGTACCAGAACCTGACATCAGTTGGAACACCACAACATAGACCAGTGGTGATGATTCACCAGGCCCAGCAGCAGTGGATCAGGACTCCATCCAACCCCATGCCCACTGCCTCCCCTGTATCATGCCATTCAAGACAAGAGCAGTTCACACAGAACACTCCAGAGAACGAAAACATTGCAGAGCCTGAAAGAAAAAGGCTGTTCtaccagAGCCCAGTGGATGTTTACAGGCTCCAGTCAGACCCACGGGGTGAATGTCTCATCATAGACTGTGTTGGCAGTGATGGAGACATGTTGGAGGAGATGTTCAGCGGGCTCCAATTCAAGGTGACCCTGGTTAAGTGGCCGAGAGTGGGGGATACCCTGTCTCTTCTCAGGCAGGCTGCCCAACCGAGGCAGACCCAGGAAGTTGATGCCTTCGCCTGCTGCATCATCAGCCGTGGTACTGCTACCGACCTGCTGGCTACAGACTCTCACAGGCTCGGGGTGCGTCTTGACACGGTCCGACACCTCTTCACCCCTGACTACTGCCCCAGGCTGGCTGGCAAGCCCAAGCTGTTCTTCATCCAGACCTATAGTGTGTCAGGCCCCCAGGACTGCTCCTCCAGGCCCACGGGTCACCCTGCTCACAGGGAGGAGGATCTGGAGACAGACGGGTATGGGGAACCTCTCAATGTGGAGACAGTCCCCACCGACGCAGATGTCTTCTGGAGCCACTGTTGGACAGATGAGGGTCAGCTGGAGGAGAAGGACCATCGGTCTGTGTACCTGCAGGCCCTGAGAGAGGCAGTTCAGAGGAGGAGAACACATCTAGTGGATGTCCATACAGAGATGAACAGGGTGATCTTCGACCACAACAGAAGGAATCCAGGAGCCAGATACAACATTAATCTGAGACACACACTCAGGAAGAATCTCTACATGTTATAGATAGACATAATATAGTTTGCTCTACTGTATAACCACTGAGCAGTACTAGATTCTATTATACAGTATACAACAGCACCCTCTACTGGCAGCTTTTGATAACCACAACAGCACCCTCTACCGGTAGCTTTGATAACCACAACAGCACCCTCTACTGGCAGCTTTGCTAACCACAACAGCACCCTCTACTGACGACAACTGTCTTGCATCACATTGAGCAGCTAGCGAGGAAGTAGTGCAATCAAAACACATTCAGTATTTTATTACTATGTATTTATTCAAGACATGTTTTTCTTTTTACTGAAGGATGGATGAAGGATTTGAGAAAATAATGTGAATTCAGATCTGTGCATTTTAAAATGTAGACAAGCCTGATAAGTAGTAATAAAACATAGACCTAAAA

Function

NR:

description
CASP8 and FADD-like apoptosis regulator isoform X2

GO: NA

KEGG:

id description
K04724 CFLAR, FLIP; CASP8 and FADD-like apoptosis regulator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021579746.2 False 2108 mRNA 0.49 11 46511637 46534272
XM_021579748.2 False 2383 mRNA 0.48 11 46511639 46534272
XM_036959433.1 True 2165 mRNA 0.48 12 46511908 46534272

Neighbor

gene id symbol gene type direction distance location
LOC110501947 LOC106582498 coding upstream 341314 46157212 ~ 46170323 (+)
serpine3 LOC106582496 coding upstream 396180 46107294 ~ 46115457 (+)
LOC110501948 LOC106582500 coding upstream 423628 46028549 ~ 46088009 (+)
LOC100136162 gbp coding upstream 503459 45981604 ~ 46008178 (+)
LOC110501949 LOC106582502 coding upstream 540512 45954363 ~ 45971125 (+)
dip2a dip2a coding downstream 5206 46539478 ~ 46771502 (+)
LOC118943615 NA coding downstream 236040 46770312 ~ 46771502 (+)
LOC110501893 LOC106582579 coding downstream 300006 46834278 ~ 46845605 (+)
fn1a fn1 coding downstream 872149 47406421 ~ 47479444 (+)
LOC110501962 LOC106582520 coding downstream 1073875 47585424 ~ 47611856 (+)
G1816205 NA non-coding upstream 313 46510928 ~ 46511324 (+)
G1816197 NA non-coding upstream 6936 46504492 ~ 46504701 (+)
G1816185 NA non-coding upstream 16243 46495071 ~ 46495394 (+)
G1816183 NA non-coding upstream 17377 46493912 ~ 46494260 (+)
G1816181 NA non-coding upstream 19085 46492140 ~ 46492552 (+)
G1816216 NA non-coding downstream 23365 46557637 ~ 46559355 (+)
G1816221 NA non-coding downstream 43750 46578022 ~ 46579959 (+)
G1816268 NA non-coding downstream 137577 46671849 ~ 46672868 (+)
G1816289 NA non-coding downstream 202017 46736289 ~ 46736489 (+)
G1816296 NA non-coding downstream 209389 46743661 ~ 46743948 (+)
G1816074 NA other upstream 176267 46334840 ~ 46335370 (+)
G1815855 NA other upstream 333880 46176607 ~ 46177757 (+)
G1815137 NA other upstream 729101 45781499 ~ 45782536 (+)
G1815113 LOC106582487 other upstream 785309 45725039 ~ 45726328 (+)
G1816206 LOC106581610 other downstream 218619 46752891 ~ 46770563 (+)
G1816706 NA other downstream 549988 47084260 ~ 47085389 (+)
G1816857 NA other downstream 762735 47297007 ~ 47297559 (+)
LOC110502185 LOC106582505 other downstream 1304109 47838223 ~ 47839253 (+)

Expression


Co-expression Network