si:ch211-67e16.3 (LOC106582540)


Basic Information

Item Value
gene id si:ch211-67e16.3
gene name LOC106582540
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 50471747 ~ 50484670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959492.1
GCGTATGAAATGGCCTTTCATATTCATATGATAATAGACATTAGATATTAAAATAAATGTGAGGGGGGTTGGGGACATGTTTAAACATCTTTTTAAATTATTTTCAAAATGACATTTAAATCAATCATAGACGACACCTGATTTAGTCGGAATCCTTCTACACTTTAACCCACTTTACAACTTGGTGTCTGTGACACTACCCAATGACAGACAAGTATACCAATTGAAGCCCTGTGataggaggagagcgagagagttatGAGGAGAGATTTCCCCTAGTCATCACTGTTCATTTGGCGTCTGTCAGAGTTAGACTCAGCTAGCTAAAGGTTCAAGCCAAATAAGAAGTTGAAATGAGAATCAGACTCCTCTCTGTGGCTGCCTGGCTCTTTACCCTTCTCTGCCCCAGCCACGaGGTTCAGGTGATGCAGCCTGAGATCCGGACACTCAACCCCGACGGTACTGTCTCCATCACCTGtagtcacacagacacagatgagCTCTTTGTCATTGACGCCAGGCTGAACAGACTCAATAACTCTGATGTTACCATGGTCTGTCAGgtgaATAACAGTCACATGGCTGACTGCACCTACATGAAGGTGACATGGAACCAGTACAAGTTCACATTACACAACTTAAAGGCTGAGGACATCTGTGGTCTGTTCCAGTGTGAGTTCTCCTTGTCATCTGTTGTTACCATGAAGCCCATCCAAACTGTAAAGGGGAAACACTCCACCAAATTGCTGTCAGaGGTTCAGGTGATGCAGCCTGAGATCCGGACACTCAACCCCGACGGTACTGTCTCCATCACCTGtagtcacacagacacagatgagCTCTTTGTCATTGACGCCAGGCTGAACAGACTCAATAACTCTGATGTTACCATGGTCTGTCAGgtgaATAACAGTCACATGGCTGACTGCACCTACACGAAGGTGACATGGAACCAGTACAAGTTCACATTACACAACTTAAAGGCTGAGGACATCTGTGGTCTGTTCCAGTGTGAGTTCTCCTTGTCATCTGTTGTTACCATGAAGCCCATCCAAACTGTAAAGGGGAAACACTCCACCAAACTGCTGCCAGGACTAGCAGGAGATGTCCTCGTTTGTCCTTCCCCTCTACTTGAGTCCCCTGAGGCTGAGCTGATTGACCAACTGAAGTGGATTGTGATTGGAGTGTCTGTGTTCCTCTGCTTCTACAGCTTCACCATCACCTTCTTCTATATCAGGCTGAGGGTCTTTCGATCTGAGGAGCTGTATGATTCGCTGACATACGTCCCCATGCAGCCTAATCGGACCCAACCTACGACGGGAAGAGGGAACATTAACTCGACCTACATGGATATGAGGAAGGTACCAGTTGGAGTGAGAGGCTCACGATCCATCAACCACAATTCCCAACTCATTTGTTGACCACGTAAAGAGACCTTCGACTGATCAGATCAATCAATTAGATTCAGAATCATTCCTTTTGAAGCCTAATGTAGGAAAGAGCTGGTCACTTAAAGGGCCCAATGCTTTATTAGTTATAAGAATGTATAGGaggctttcttttttttcttttaatGTTGCAAGTTGGGTGAAAACAATTACTTCTTTATGTTCATGACATTTTGCACCGTTGATTCAGCATCATCACACTGAGACAAAAAAAAGGTTTGAAGTGATGTGAAAACAACgttgcgttttttttttttttttgttgccaagtGCGATGCTGCTTACTGGTCTAGAATGTGTTTTGATAGAAGTGCCTAGGTGAGACTTTCACGACTCGTCACAATGAATGTAGAAACCAAAACAAGTGCTGCTTGTTATATTCACATGTAATTGTAATAAACGTATGATGCATATTGGAGAGAGCGGAGTGATATGGGAAATCACCAGCTAAAGGAATTAAGCAGACTTATttatttcacaaaaaaaaatcaacaacaacattgatttcaaagtttaacaaaccatgtaactctatgcacaaggactactttgaacaataTACACAGAATATGTCCCAAAAACACATGTACTAGAAGAACTGTGAAGATGCAAAATTTTGATAACAGAATTACGGTAAAATTTCCCTCccctttttttttcatttttaggCGACCACGTTTTATCAAAACTCTCGTTTTTTAAATTTCTTCTacgaattaagattcaaagatgtctgaaGGAAAGAAGGACGTGTCAGCTGTGACATCACACGTTGAGTTTGACCGTTTTTATTTTTGGCTATTGAACTATATAGTACGGG

Function

NR:

description
uncharacterized protein LOC110501968 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959492.1 True 2268 mRNA 0.42 9 50471747 50484670

Neighbor

gene id symbol gene type direction distance location
si:ch211-67e16.4 LOC106582542 coding downstream 6067 50460094 ~ 50465680 (-)
prkag3b LOC106592041 coding downstream 227802 50122888 ~ 50243945 (-)
LOC118943599 NA coding downstream 990787 49470102 ~ 49480960 (-)
LOC118943644 NA coding downstream 1507114 48962212 ~ 48964633 (-)
LOC110502188 LOC106582504 coding downstream 1825826 48505445 ~ 48645921 (-)
cd28 LOC100136275 coding upstream 10397 50495067 ~ 50496991 (-)
LOC118943619 NA coding upstream 37334 50521227 ~ 50533748 (-)
tmem237a LOC105009128 coding upstream 236027 50720697 ~ 50753131 (-)
LOC110502197 LOC106582575 coding upstream 318981 50803651 ~ 50853194 (-)
als2a NA coding upstream 387785 50872455 ~ 50960735 (-)
G1819866 NA non-coding downstream 34330 50436976 ~ 50437417 (-)
G1819844 NA non-coding downstream 70484 50400763 ~ 50401263 (-)
G1819843 NA non-coding downstream 71057 50398482 ~ 50400690 (-)
G1819274 NA non-coding downstream 83197 50388307 ~ 50388550 (-)
G1819893 NA non-coding upstream 15101 50499771 ~ 50503641 (-)
G1819894 NA non-coding upstream 22847 50507517 ~ 50509978 (-)
G1819911 NA non-coding upstream 86183 50570853 ~ 50572801 (-)
G1819250 NA other downstream 166709 50301801 ~ 50305038 (-)
G1819189 NA other downstream 257861 50137937 ~ 50219233 (-)
G1818802 NA other downstream 752369 49717632 ~ 49719378 (-)
G1818417 NA other downstream 1305380 49165751 ~ 49166367 (-)
G1820012 NA other upstream 411902 50896572 ~ 50897153 (-)
G1820053 LOC106582548 other upstream 538768 51023438 ~ 51026181 (-)
carf LOC106582551 other upstream 598319 51059254 ~ 51085922 (-)
G1820212 NA other upstream 941733 51426403 ~ 51427042 (-)

Expression


Co-expression Network