XLOC_037104


Basic Information

Item Value
gene id XLOC_037104
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 22312733 ~ 22313617 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075101
tttttattaacataaataacCATGTTAACCAAATaacgagcaacaaataataaataattactatGCGTTCACTATTCGATTttactgatttgtttttttttctcttttttttttttttttttgctgctgccTACGGCTGTCAGAGGGTCCAGTGCTCCAGTTCTTCACATGTTTTAACTGCTTATCTTAACTAGACTTGTACTCCTCAACCTGTTGAAATTGGGACAAGATTTCATAGGTGAATGCTGGTATGGGAGTTGGGATAAAATTATAACATggacaaatgaaaaaataaattaaaagggcaaacaatttagatttttatctaACTCAAGGAAGCAACAGGGATGCATTTAGTATTACTAAATGATTATggaaaacatccccacacaccAGCAGCAGCATTGTGAAAGACAAATCATGAAGATGGAAAAGCACCTTGAGAATGGAagTCACACAGATGGCAGGGGCAGACTGGCGAGGAGACTCGGTGTGAAGATGAGACTCTTGGCAAGTTAAAACACATCACTGATGTGAGAAGACCTGAGAAGACAAAATGCTGTACAGTAATAAAatgaacttaataataataaagaataaaatgatGTTAAATTGTTTGGTAAATTTTAAAGCACA
>TCONS_00075102
CTTCACATGTTTTAACTGCTTATCTTAACTAGACTTGTACTCCTCAACCTGTTGAAATTGGGACAAGATTTCATAGGTGAATGCTGGTATGGGAGTTGGGATAAAATTATAACATggacaaatgaaaaaataaattaaaagggcaaacaatttagatttttatctaACTCAAGGAAGCAACAGGGATGCATTTAGTATTACTAAATGATTATggaaaacatccccacacaccAGCAGCAGCATTGTGAAAGACAAATCATGAAGATGGAAAAGCACCTTGAGAATGGAagATGGCAGGGGCAGACTGGCGAGGAGACTCGGTGTGAAGATGAGACTCTTGCACTGATGTGAGAAGACCTGAGAAGACAAAATGCTGTACAGTAATAAAatgaacttaataataataaagaataaaatgatGTTAAATTGTTTGGTAAATTTTAAAGCACA
>TCONS_00075103
TTGTACTCCTCAACCTGTTGAAATTGGGACAAGATTTCATAGGTGAATGCTGGTATGGGAGTTGGGATAAAATTATAACATggacaaatgaaaaaataaattaaaagggcaaacaatttagatttttatctaACTCAAGGAAGCAACAGGGATGCATTTAGTATTACTAAATGATTATggaaaacatccccacacaccAGCAGCAGCATTGTGAAAGACAAATCATGAAGATGGAAAAGCACCTTGAGAATGGAagATGGCAGGGGCAGACTGGCGAGGAGACTCGGTGTGAAGATGAGACTCTTGGCAAGTTAAAACACATCACTGATGTGAGAAGACCTGAGAAGACAAAATGCTGTACAGTAATAAAatgaacttaataataataaagaataaaatgatGTTAAATTGTTTGGTAAATTTTAAAGCACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075101 False 636 lncRNA 0.34 3 22312733 22313617
TCONS_00075102 False 450 lncRNA 0.36 3 22312895 22313617
TCONS_00075103 True 432 lncRNA 0.36 3 22312929 22313617

Neighbor

gene id symbol gene type direction distance location
XLOC_037103 crygm2e coding upstream 231744 22080122 ~ 22080989 (+)
XLOC_037102 zgc:153846 coding upstream 294429 22017368 ~ 22018304 (+)
XLOC_037101 crygm1 coding upstream 299914 22011912 ~ 22012819 (+)
XLOC_037100 si:dkey-57a22.15 coding upstream 307900 22003942 ~ 22004833 (+)
XLOC_037099 crygm6 coding upstream 310955 22000812 ~ 22001778 (+)
XLOC_037105 crygs3 coding downstream 37826 22351443 ~ 22366295 (+)
XLOC_037106 crygs4 coding downstream 46302 22359919 ~ 22360742 (+)
XLOC_037107 dgkg coding downstream 61714 22375331 ~ 22618558 (+)
XLOC_037108 BX548053.3 coding downstream 263328 22576945 ~ 22577059 (+)
XLOC_037109 etv5a coding downstream 318055 22631672 ~ 22649297 (+)
XLOC_037095 CR536604.1 non-coding upstream 326737 21984109 ~ 21985996 (+)
XLOC_037089 NA non-coding upstream 546998 21761696 ~ 21765735 (+)
XLOC_037086 BX649266.2 non-coding upstream 816034 21495873 ~ 21496699 (+)
XLOC_037078 pla1a non-coding upstream 1086601 21214940 ~ 21226132 (+)
XLOC_037077 NA non-coding upstream 1107261 21202272 ~ 21205472 (+)
XLOC_037110 NA non-coding downstream 328769 22642386 ~ 22642685 (+)
XLOC_037116 NA non-coding downstream 675324 22988941 ~ 22998060 (+)
XLOC_037119 CR394542.1 non-coding downstream 732650 23046267 ~ 23046385 (+)
XLOC_037122 NA non-coding downstream 812539 23126156 ~ 23128231 (+)

Expression


Co-expression Network