XLOC_037313 (si:dkey-3d4.3)


Basic Information

Item Value
gene id XLOC_037313
gene name si:dkey-3d4.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 36946340 ~ 36956667 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073424
CTTGTATTCAGCGATACTTTATACATACCTCTGTTTCGCTCATCCTTTTCAATGAAGATAACGGGAGAACAAACATTGACAGACGATTTGAAGCGAGATTAACCCATGAGACTCTCGGAGCCCAAGCATGAACCAGGGGAGCGGTGCTTGCTTGTGGACTCCAGTGCCTCAGCAATGCCCTGCACCATGTGATCGTTACAAGCATGCTTCTTGTGCCCACAGAGGACATGTTTACTTGCTAGGTGGCAGAGAAAAATGCTCACTGAGAGATTTCTGGAAATACAATGTGGTCTGTAACGACTGGGTTGAGCTTCCCTGTGATAGCGAAGAAGCACCTGAAGAAGTGGAAGAGCACACCATGGTAGCACACCAGgGATTTTTATATGTCTTTGGAGGATTGAGAGATTCATCATATTCTAACTCAAAAACACCTCTTTGGGTGTTTGATACaggTAAAGAGTGCTGGATTAACTGGAAAGCTGCCAGTGTGGCCCTACAGGGAGTGACACCGGGGAACAGAAAAGGTCACAGTGCAGTCATCTTGGGGTCATCGATGTACATCTATGGTGGATACATTGATATAAAAGGATCGACAAAGGAATTTTGGAAATTTGATTTTGAATCCAGGCTGTGGTCTCTACGAAGCAGTGCACAAGTTGGGC

Function

symbol description
si:dkey-3d4.3 Is expressed in brain; cranial ganglion; neurons; retinal ganglion cell layer; and trigeminal placode.

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-527 Is expressed in brain; cranial ganglion; neurons; retinal ganglion cell layer; and trigeminal placode.

Ensembl:

ensembl_id ENSDARG00000074079

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073424 True 662 mRNA 0.46 7 36946340 36956667

Neighbor

gene id symbol gene type direction distance location
XLOC_037312 NA coding upstream 13808 36928055 ~ 36932532 (+)
XLOC_037311 BX664716.2 coding upstream 148506 36794384 ~ 36797834 (+)
XLOC_037310 NA coding upstream 170826 36770664 ~ 36775514 (+)
XLOC_037309 lrp1bb coding upstream 251342 36314867 ~ 36694998 (+)
XLOC_037308 NA coding upstream 768919 36124753 ~ 36177421 (+)
XLOC_037314 inhbb coding downstream 10627 36967294 ~ 36974879 (+)
XLOC_037315 NA coding downstream 34496 36991163 ~ 36991851 (+)
XLOC_037316 gli2a coding downstream 185169 37141836 ~ 37297485 (+)
XLOC_037317 BX548071.1 coding downstream 224773 37181440 ~ 37181557 (+)
XLOC_037318 slc15a2 coding downstream 363555 37320222 ~ 37339656 (+)
XLOC_037307 NA non-coding upstream 843668 35987844 ~ 36102672 (+)
XLOC_037320 BX322793.1 non-coding downstream 455203 37411870 ~ 37411986 (+)
XLOC_037321 NA non-coding downstream 518480 37475147 ~ 37492914 (+)
XLOC_037322 NA non-coding downstream 550292 37506959 ~ 37508273 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_04758013_04761749 NA coding CI01000009 null 4756351 ~ 4761839 (+)