XLOC_037319 (slc49a4)


Basic Information

Item Value
gene id XLOC_037319
gene name slc49a4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 37366973 ~ 37453128 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073431
GTCATCGGATGTTTTTGTTTCGATGGGCAGCTGACAATTGAGCGACTGCCCTAGTTTTTAATGTGCCATGATATAAACGTTGCTAGATAGcataaagacattttttaacGTGATACCGTGTGTTCTCGATGGGTGCCGCAGAAAGCACCGAAGGGGAAAGGGAGCCTTTGCTGGTTCCAGCCCAGCCGGCGACAAACACCACAAGCACTCAGCCTGTTTTCAGCAGGGTGTACGGGagacgatggtttgttctcacTATGTTTTCATTGTTGGGTTTTATGCAAGGACTCGTGTGGAACACCTGGGGCCCGATCCAGAACTCAGCCAAACATGTGTTCGAGTTCTCATCGACAGATATCGCCATTCTGGTGCTCTGGGGTCCAGTAGGTTACCTGCCCTGGCTGCTCTTTATGTGGCTGATGGACAAGAAAGGTTTACGAGCATCTTTGTTACTGTCAGCGTTCTTCATGGTGCTGGGCGCAGCGTTACGAAGCGTGCCCCTTAAAGACCTGTACTACAGACGCTGGATGATTCATGGAGGTCAACTTCTAAATGGTTTAGCTGGTCCTACTGTTATGAGTGCCGCCCCTCTTCTCTCTACTACTTGGTTTGCTCCTGATCAGAGAGCTACAGCCACCGCTATTGCATCACTAATCAGTTACCTGGGATCAGCCTGTGcctttctgattggtccactggcCGTCCCTGCACCCAATGACACTGAGAAATTGGGAAACGTCATCTACTGGAACCAAAACCACATAGGAAACAGGATACAGTTTGTTCTTTACACAGAGTTTGGGATGATTGCAGCACTTTTCGTGGCTGTGCTGTTCTACTTCCCGTCCAGGCCCCCGATCCCTCCTAGCGTGGCAGCGGCTAGTCAGCGTCTCAGCTACAGGAGCAGCATCTGCAGACTGCTGAGCAACATGCGTTTCCTGATGATAGCACTCGCCTACTCCGTGCCCACAGGGGTTGCTGCCGGCTGGGCCGGTGTGTTGGACATGATTTTAACACCTGCTAAAGTCAGCCAGGTGGACGCAGGCTGGATCGGCTTCTGGTCCATAGTTGGAGGCTGTGTGTTTGGTGTGGCCATGGCCAGGTTTGCTGACTATATTCGAGGAATGCTGAAGCTGATTTTGGTGCTGATGTTTGCCGGCGCATCCTTGGCGGCCACCTGGTTCACGCTCACCTGCCTGACCAGGCTCACTCACCTGCCCTCCACGAAAGCCACACTGTACACCTCCTGCATCCTGGTTGGCATCTTCATCAACagcagtgtgcccatcttcttgGAGCTGTTCATTGAGACGGTTTACCCTGTACCCGAGGGCATCACCTGCGGGGTGGTCACTTTCCTCAGCAACCTCTTCACTGGGCTTCTGCTGTTTTGCCTCACTTTTTACTTCACAGAGCTGTCCTGGTTGAACTGGTGTCTGACAGGATCCTGCATCTTCAgtctcctgctcctcctcctcttcaggGAATCTTACGACCGCCTCTATTTGGATGTCTTTGTCTCTGTCTGAGCACCgaaagagggttttttttttccaagaagaagaagaaaactgAAGTGCTTGTTTCCTATATGGGCACTATATTCCAGCAGAGTGCAGAGAAAGGGCACACAGCTTGACGCTCACTTTTATGGATCTCTgttttttttggggttttttttggttttataagATGTAATTGTGAAATATACGACCAGCAGTGGTGCGTTGTGTTAGCATCATAACTTAACAGTGGGAACCCGAGATCTAACTAAAGAGGATAGACATATAGATATTGACCTTTCTACTTGACCTTCTGGATGCATCCCTTTTTTtgtgtactttttattattagcattttttaaaagtgatcTGTGGAACTTTTGTGTTTACATAATGGCACAAAATAAGGGACTTCCATTGCATAGAGATACAGGCACAATTTGCAGTGATGGCGACTCAAGTGCTCTCACCACATGTAATGGTAGCGTAATGGATAATTATAGACAAGCTCAATTAGCTGTCTGGCGGCTGTCTGCAGACCGGGGACCTCTTAGGGCTGTAGTGTCACTTGTGAACAGCCTGTGGGATCCAAGCTTTAATTGACCTGTGATAGGTCTGTCAATAAGTGGCATGTGCCGTGCTCCTCCAGTCTTCTCGTTTTCCTTGTCAGCCCATATTATGCAAAGGATAATTCACTCGTGGCTGTGAAAAGTTTTCCCAAGGTGTCTGTGGTCATCGTTTACATGACGAGGGATCTGTTTTATTAAACGTTCGTCGTCTTCTCGTGTGACGGCCTAGTTTGTAGCTGTAGCATGCGCACATTGGGTGAGCCTTTTACCCGTTTTATAGACTTTTATGCAAGCGGTcatgttttaaatgtgatttaataactaattttaggGATTAATACACTAATGTTGTCAAAAGGGATTGTTTTGGTTAATTTAGGTTTGAATACTGTTGCAGAAGAGCGCTTAAACGTGGACTTGCTGGACCGATACAACACTTCGCCAGCAATAAAAAGCCATGTTCGGTAGCCTTTCGTGATTTGTGGCGTAACCTCATGCAACGTCGAGTGCAATACTTCCTCTCCCCTCTGAACATATGAACCCCCGGTGTTTTTCTCCACCTGCATTTTCACTATAAAAATGGAGCCCATCTGGACTGCATTAGTTGCATGCGACTTTGCTGTGAAAATCAAAATTTGCCAGCTTGAGACGTATACAAATCTCAGACTGCTGTTGGATTTAGGGGTGATTTGATTGACGGTTATTGGTGGAAATCAGAAGCTTAATGTTTGATGCAGACGGTTCTGTTCTCCTGCATGCAAATCACTTTTGTCTGTACAGAACGGCTCTCTCTTTTTAGCTGTGGTTAACATTCGTTGCCTTAATTAACAGTGACCTTTGTTGTGTCCTCCTGTTCACTGTGATGTGCTTGTGCCCTGTTCTGTCACTGTAATGTTAACGGTGAGAGGCACTGCAGGGGCGACGTGGCCCTGTCCATGTGTCAATACATGTCAAAGATTTTTAGCACCTTAttaaaaaagatgtttttaaaa

Function

symbol description
slc49a4 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human SLC49A4 (solute carrier family 49 member 4).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040912-167 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human SLC49A4 (solute carrier family 49 member 4).

Ensembl:

ensembl_id ENSDARG00000009783

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073431 True 3063 mRNA 0.47 9 37366973 37453128

Neighbor

gene id symbol gene type direction distance location
XLOC_037318 slc15a2 coding upstream 27317 37320222 ~ 37339656 (+)
XLOC_037316 gli2a coding upstream 69488 37141836 ~ 37297485 (+)
XLOC_037317 BX548071.1 coding upstream 185416 37181440 ~ 37181557 (+)
XLOC_037315 NA coding upstream 375122 36991163 ~ 36991851 (+)
XLOC_037314 inhbb coding upstream 392094 36967294 ~ 36974879 (+)
XLOC_037321 NA coding downstream 22019 37475147 ~ 37492914 (+)
XLOC_037322 NA coding downstream 53831 37506959 ~ 37508273 (+)
XLOC_037323 pdia5 coding downstream 301717 37754845 ~ 37840350 (+)
XLOC_037324 sec22a coding downstream 397232 37850360 ~ 37862563 (+)
XLOC_037325 CU896658.1 coding downstream 424306 37877434 ~ 37877550 (+)
XLOC_037312 NA non-coding upstream 434441 36928055 ~ 36932532 (+)
XLOC_037311 BX664716.2 non-coding upstream 569139 36794384 ~ 36797834 (+)
XLOC_037310 NA non-coding upstream 591459 36770664 ~ 36775514 (+)
XLOC_037326 NA non-coding downstream 568762 38021890 ~ 38024061 (+)
XLOC_037330 BX548038.1 non-coding downstream 707318 38160446 ~ 38160572 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_04987804_05029077 DIRC2 coding CI01000009 null 4987804 ~ 5029077 (+)