XLOC_037329 (nifk)


Basic Information

Item Value
gene id XLOC_037329
gene name nifk
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38158570 ~ 38162095 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073442
tttgaattgtcGCTTGCATTAGCAGTTTCCTGAACGAGGCACAACGTGGTTTTAGGAGAAGCCATACGACAGTAGGTTCAAAACgtttagctttatttatttgaccactgTTAGATTTCAATATGACAGAAGGCAAATCATCAGACAAGCCGGCGAAAAGACTGCTGGCTCTGAATCCGAAAGAGGACGCAGAATTTCAGAAGAAAGTGCAGCAAGTGAAGAAGCGTCCTCAAACGGGTCAAACACTTAGTCCAGGAGTGCTGTATGTTGGTCATCTTCCTCGAGGACTGTTTGAGCCTCAGTTGAAATCTTACTTTGAGCAGTTTGGCAAAGTCTTACGATTGAGAGTTTCCAGGAGTAAAAAGACTGGTGGGAGCAAAGGCTATGGATTTGTGGAGTTTGAGTGTGATGAAGTGGCTAAGATTGTGGCTGAAACCATGAACAACTACCTTATGGGAGAACGCATTATAAAATGTCACGTTATTCCACCTGAGAAGGTTCATGAAAAGCTCTTTGTCGGCTCTATTGCTGGCTTCAAGAAGCCAAAGTATCCTGCAGTGACTCGGtataacaaaacacacacagaagaTGATGTGAAGAAAGTTGGCACAAAGCTTTTAAGCAAAGAGTCTAAGCTGCGCAAGAGACTGGCAGCAAAAGGCATTGACTATGATTTCCCAGGATTTgCAGCACAGATTCCAGCTAAAAAGGCTCCATCAGAAGCAAATGTTTCAGTGTGCAGTGAGGATGTAACTCCAGTGTGCACACCTTCACTTTTGGAGAGGAGAAAGTCTCTCAGAGTTGaggatgatgatgttgatgatgaaatAGTCATCAAAGTCAAACCACTCCCAGAAAACAGTGATGATGTGGAAGAAAGTGAGGAAGAGTCTGCTGAAGAGGATGAAGGTGAAGAGGAGGAAGCGGCTTAAAAGGAGAATTTAGTGACTAATAAAGACTTTATTCGCTGATTCAGAAGGGGACGCTGGACTCGCTTTTCAGAGCCATTTGTATGCGATTAGTTCTCAGTTCTCCCCTAAGGCTGGAGAAGAGGACCACACATATTACTCGCACACATTATCCTGATTGTCAGGAATCTGTTGATTTGAGGCGTGTTATGCAGAGTTTGTGCCCGTGACCTTTTAAGGGTACAGTGTGGTTGACCATAGAGTTGCTGAAATGACTGTATTAATCAAAGCAGATGTATAGTGttaatatgaaaataattattttcattgtATTTGACACAATTTCTGTCCACATATGTTGCATTGCAATGTTTGTAAAACATGTTTAAACcgtaaaataaactgttttaataaTTGTAAAGCATAATTTACTGAA
>TCONS_00073443
TGAACGAGGCACAACGTGGTTTTAGGAGAAGCCATACGACAGTAGGTTCAAAACgtttagctttatttatttgaccactgTTAGATTTCAATATGACAGAAGGCAAATCATCAGACAAGCCGGCGAAAAGACTGCTGGCTCTGAATCCGAAAGAGGACGCAGAATTTCAGAAGAAAGTGCAGCAAGTGAAGAAGCGTCCTCAAACGGGTCAAACACTTAGTCCAGGAGTGCTGTATGTTGGTCATCTTCCTCGAGGACTGTTTGAGCCTCAGTTGAAATCTTACTTTGAGCAGTTTGGCAAAGTCTTACGATTGAGAGTTTCCAGGAGTAAAAAGACTGGTGGGAGCAAAGGCTATGGATTTGTGGAGTTTGAGTGTGATGAAGTGGCTAAGATTGTGGCTGAAACCATGAACAACTACCTTATGGGAGAACGCATTATAAAATGTGAGATGAGAGCATACAagattattaatcattattttttttgtctgtgtgtgatgtttttttatgaGTAATGCTGTGTATTGTACTTTTCAGGTCACGTTATTCCACCTGAGAAGGTTCATGAAAAGCTCTTTGTCGGCTCTATTGCTGGCTTCAAGAAGCCAAAGTATCCTGCAGTGACTCGGtataacaaaacacacacagaagaTGATGTGAAGAAAGTTGGCACAAAGCTTTTAAGCAAAGAGTCTAAGCTGCGCAAGAGACTGGCAGCAAAAGGCATTGACTATGATTTCCCAGGATTTgCAGCACAGATTCCAGCTAAAAAGGCTCCATCAGAAGCAAATGTTTCAGTGTGCAGTGAG
>TCONS_00073444
ACGAGGCACAACGTGGTTTTAGGAGAAGCCATACGACAGTAGGTTCAAAACgtttagctttatttatttgaccactgTTAGATTTCAATATGACAGAAGGCAAATCATCAGACAAGCCGGCGAAAAGACTGCTGGCTCTGAATCCGAAAGAGGACGCAGAATTTCAGAAGAAAGTGCAGCAAGTGAAGAAGCGTCCTCAAACGACTGGTGGGAGCAAAGGCTATGGATTTGTGGAGTTTGAGTGTGATGAAGTGGCTAAGATTGTGGCTGAAACCATGAACAACTACCTTATGGGAGAACGCATTATAAAATGTCACGTTATTCCACCTGAGAAGGTTCATGAAAAGCTCTTTGTCGGCTCTATTGCTGGCTTCAAGAAGCCAAAGTATCCTGCAGTGACTCGGtataacaaaacacacacagaagaTGATGTGAAGAAAGTTGGCACAAAGCTTTTAAGCAAAGAGTCTAAGCTGCGCAAGAGACTGGCAGCAAAAGGCATTGACTATGATTTCCCAGGATTT
>TCONS_00073445
CTCAAACGGTATGATGCGTGGCCATGTGGCCTTAGTTTAGCCTGACAGTGCttcagattcacatttaaaacgTGGTTGGAacaaaatgtttcttttaatCACTAATATGCTGTAGCTAGAGTTAAGTTCGGGTCAAACACTTAGTCCAGGAGTGCTGTATGTTGGTCATCTTCCTCGAGGACTGTTTGAGCCTCAGTTGAAATCTTACTTTGAGCAGTTTGGCAAAGTCTTACGATTGAGAGTTTCCAGGAGTAAAAAGACTGGTGGGAGCAAAGGCTATGGATTTGTGGAGTTTGAGTGTGATGAAGTGGCTAAGATTGTGGCTGAAACCATGAACAACTACCTTATGGGAGAACGCATTATAAAATGTCACGTTATTCCACCTGAGAAGGTTCATGAAAAGCTCTTTGTCGGCTCTATTGCTGGCTTCAAGAAGCCAAAGTATCCTGCAGTGACTCGGtataacaaaacacacacagaagaTGATGTGAAGAAAGTTGGCACAAAGCTTTTAAGCAAAGAGTCTAAGCTGCGCAAGAGACTGGCAGCAAAAGGCATTGACTATGATTTCCCAGGATTTgCAGCACAGATTCCAGCTAAAAAGGCTCCATCAGAAGCAAATGTTTCAGTGTGCAGTGAGGATGTAACTCCAGTGTGCACACCTTCACTTTTGGAGAGGAGAAAGTCTCTCAGAGTTGaggatgatgatgttgatgatgaaatAGTCATCAAAGTCAAACCACTCCCAGAAAACAGTGATGATGTGGAAGAAAGTGAGGAAGAGTCTGCTGA

Function

symbol description
nifk Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; brain; eye; immature eye; and segmental plate. Orthologous to human NIFK (nucleolar protein interacting with the FHA domain of MKI67).

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00910 Nitrogen metabolism
ko00625 Chloroalkane and chloroalkene degradation

ZFIN:

id description
ZDB-GENE-021231-4 Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; brain; eye; immature eye; and segmental plate. Orthologous to human NIFK (nucleolar protein interacting with the FHA domain of MKI67).

Ensembl:

ensembl_id ENSDARG00000040666

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073442 False 1344 mRNA 0.41 6 38158570 38162095
TCONS_00073443 False 809 lncRNA 0.42 4 38158600 38161207
TCONS_00073444 False 524 mRNA 0.43 3 38158603 38161066
TCONS_00073445 True 792 processed_transcript 0.43 6 38158798 38161649

Neighbor

gene id symbol gene type direction distance location
XLOC_037328 cacnb4a coding upstream 28485 38074082 ~ 38130085 (+)
XLOC_037327 stam2 coding upstream 93423 38043337 ~ 38065147 (+)
XLOC_037326 NA coding upstream 134509 38021890 ~ 38024061 (+)
XLOC_037325 CU896658.1 coding upstream 281020 37877434 ~ 37877550 (+)
XLOC_037324 sec22a coding upstream 296007 37850360 ~ 37862563 (+)
XLOC_037332 clasp1a coding downstream 1781 38163876 ~ 38291809 (+)
XLOC_037333 tfcp2l1 coding downstream 130824 38292919 ~ 38311750 (+)
XLOC_037334 ddx18 coding downstream 152371 38314466 ~ 38352220 (+)
XLOC_037335 plcd4b coding downstream 207777 38369872 ~ 38390990 (+)
XLOC_037336 bcs1l coding downstream 237817 38399912 ~ 38407176 (+)
XLOC_037322 NA non-coding upstream 650297 37506959 ~ 37508273 (+)
XLOC_037321 NA non-coding upstream 665656 37475147 ~ 37492914 (+)
XLOC_037320 BX322793.1 non-coding upstream 746584 37411870 ~ 37411986 (+)
XLOC_037349 CR376853.1 non-coding downstream 624833 38786928 ~ 38787044 (+)
XLOC_037351 CR812481.1 non-coding downstream 848337 39010432 ~ 39014598 (+)
XLOC_037353 NA non-coding downstream 1701158 39863253 ~ 39865672 (+)
XLOC_037354 BX255912.2 non-coding downstream 1975402 40137497 ~ 40137612 (+)
XLOC_037355 BX936447.2 non-coding downstream 2116052 40278147 ~ 40278263 (+)

Expression


Co-expression Network