XLOC_037644 (BX537313.1)


Basic Information

Item Value
gene id XLOC_037644
gene name BX537313.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 9009123 ~ 9024269 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073916
TTTATCATTCTGTAGGTGCAGAtttgccagcacacacacacacacacacacacacacacacacacagagagagagagagagagagagagagagagattcaaaACATAATTAACTGACCTAAaggtcagatctgagtttcacaCATACTTTTCAATCCGGACTGGGGCTGAACACCTCCAGCTCTATTTTAACCTGCAGAGACATGGAGACATACACATATACCAGCGTCTGCATTGCTGTCACGTCTCTGCGTCACCGCCTTTCATCATCCCAGCGCTTGCAGACCTGACTCATGGATCATGTAAAAATGAGTATGTGGATCCTGCAGACTCCTGCTGATGCCGGTTTGAAAGCCTACCACTGCACTTCCTTTTGAATGGACATTAGAAGGTGTGTGAAGAGAAGTCTGACTACGAATTTGTTATGATGGGAAACGGTGGGACACTGGTGTTGGTCATTCTCACATCCATCTTTATGGCAAGAAGTCACACAAAAGTTGTCCATCTTTCCACCCATCTGGAAAGTGATAATGGTAAGAAGATTGCTGTCTGTAAGGCCAGACATACAATGATAGAACCCACTCTTCACTGGGAACCTCCCCTAAGCGTTTTGTACAGCTATTTTACTGTCGACTACAACAACGCATCCTCCACTATTGAGAATCGTGTGTATCTGGATGATCATTTCAACATCATTGAGCTTGTCTGTGTGGCCACATACCCATCTCCCATGTCCGGCTCTGTACGGCTAAAGAAGACTCTACAACTTCCATCAGGAGAAAGATTTTGTCTCCGAATAAAGGAGGACACACCTGAGAAGAGATGAAGTGATACAGAGAAGTGTGAATGGAAAAAACGAATTTTTGAATGACCTGaggattaaaatttttttttatttaatagcttatccttacaaaaaaaaaagtatgtgttGTGTTTATCATTAGATCAATTTTTTAATCTGGCATCTAAATGAAAAATCTTGCATGTTCTCATCTTTCTCATGATTGTAACATGATTTGATAGTGTGCCTGATGTATTTGTGTGTTGATGTATTTTTGATGCTTAAAGTGTGGTTTAAATTACTATATCTATCCAGCTTCACATACAAATCATAGTCTACAAATCATTTTCGAATAAAACCTAAGAATCTTGCAATCTTTATTTGTGGTAATCTGAAGTGATTTCATTACTTGCACATATGCAATAAAGGTCATTACTGTTGCTTGAGACAGAGAATAGCG
>TCONS_00073915
TTTATCATTCTGTAGGTGCAGAtttgccagcacacacacacacacacacacacacacacacacacagagagagagagagagagagagagagagagattcaaaACATAATTAACTGACCTAAaggtcagatctgagtttcacaCATACTTTTCAATCCGGACTGGGGCTGAACACCTCCAGCTCTATTTTAACCTGCAGAGACATGGAGACATACACATATACCAGCGTCTGCATTGCTGTCACGTCTCTGCGTCACCGCCTTTCATCATCCCAGCGCTTGCAGACCTGACTCATGGATCATGTAAAAATGAGTATGTGGATCCTGCAGACTCCTGCTGATGCCGGTTTGAAAGCCTACCACTGCACTTCCTTTTGAATGGACATTAGAAGGTGTGTGAAGAGAAGTCTGACTACGAATTTGTTATGATGGGAAACGGTGGGACACTGGTGTTGGTCATTCTCACATCCATCTTTATGGCAAGAAGTCACACAAAAGGAGAAAGATTTTGTCTCCGAATAAAGGAGGACACACCTGAGAAGAGATGAAGTGATACAGAGAAGTGTGAATGGAAAAAACGAATTTTTGAATGACCTGaggattaaaatttttttttatttaatagcttatccttacaaaaaaaaaagtatgtgttGTGTTTATCATTAGATCAATTTTTTAATCTGGCATCTAAATGAAAAATCTTGCATGTTCTCATCTTTCTCATGATTGTAACATGATTTGATAGTGTGCCTGATGTATTTGTGTGTTGATGTATTTTTGATGCTTAAAGTGTGGTTTAAATTACTATATCTATCCAGCTTCACATACAAATCATAGTCTACAAATCATTTTCGAATAAAACCTAAGAATCTTGCAATCTTTATTTGTGGTAATCTGAAGTGATTTCATTACTTGCACATATGCAATAAAGGTCATTACTGTTGCTTGAGACAGAGAATAGCG
>TCONS_00075295
gagagagagagagagagagagattcaaaACATAATTAACTGACCTAAaggtcagatctgagtttcacaCATACTTTTCAATCCGGACTGGGGCTGAACACCTCCAGCTCTATTTTAACCTGCAGAGACATGGAGACATACACATATACCAGCGTCTGCATTGCTGTCACGTCTCTGCGTCACCGCCTTTCATCATCCCAGCGCTTGCAGACCTGACTCATGGATCATGTAAAAATGAGTATGTGGATCCTGCAGACTCCTGCTGATGCCGGTTTGAAAGCCTACCACTGCACTTCCTTTTGAATGGACATTAGAAGGAGAAAGATTTTGTCTCCGAATAAAGGAGGACACACCTGAGAAGAGATGAAGTGATACAGAGAAGTGTGAATGGAAAAAACGAATTTTTGAATGACCTGaggattaaaatttttttttatttaatagcttatccttacaaaaaaaaaagtatgtgttGTGTTTATCATTAGATCAATTTTTTAATCTGGCATCTAAATGAAAAATCTTGCATGTTCTCATCTTTCTCATGATTGTAACATGATTTGATAGTGTGCCTGATGTATTTGTGTGTTGATGTATTTTTGATGCTTAAAGTGTGGTTTAAATTACTATATCTATCCAGCTTCACATACAAATCATAGTCTACAAATCATTTTCGAATAAAACCTAAGAATCTTGCAATCTTTATTTGTGGTAATCTG
>TCONS_00075296
TGAACACCTCCAGCTCTATTTTAACCTGCAGAGACATGGAGACATACACATATACCAGCGTCTGCATTGCTGTCACGTCTCTGCGTCACCGCCTTTCATCATCCCAGCGCTTGCAGACCTGACTCATGGATCATGTAAAAATGAGTATGTGGATCCTGCAGACTCCTGCTGATGCCGGTTTGAAAGCCTACCACTGCACTTCCTTTTGAATGGACATTAGAAGCGACAACACAAACAAAGACGCAGG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117587

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073916 False 1243 lncRNA 0.40 4 9009123 9024269
TCONS_00073915 False 964 lncRNA 0.38 3 9009123 9024269
TCONS_00075295 False 718 lncRNA 0.37 2 9009189 9024195
TCONS_00075296 True 247 lncRNA 0.48 2 9011318 9024102

Neighbor

gene id symbol gene type direction distance location
XLOC_037643 ing1 coding downstream 29655 8973080 ~ 8979468 (-)
XLOC_037642 rab20 coding downstream 113880 8887528 ~ 8895243 (-)
XLOC_037641 col4a1 coding downstream 338965 8634229 ~ 8670158 (-)
XLOC_037640 irs2b coding downstream 555063 8429239 ~ 8454060 (-)
XLOC_037639 si:ch211-145c1.1 coding downstream 695095 8288268 ~ 8314028 (-)
XLOC_037645 NA coding upstream 2114 9026383 ~ 9050515 (-)
XLOC_037646 cbsb coding upstream 156351 9180620 ~ 9228941 (-)
XLOC_037647 u2af1 coding upstream 206177 9230446 ~ 9242777 (-)
XLOC_037648 si:ch211-214p13.3 coding upstream 227197 9251466 ~ 9282519 (-)
XLOC_037649 NA coding upstream 262150 9286419 ~ 9289070 (-)
XLOC_037638 NA non-coding downstream 722915 8284155 ~ 8286208 (-)
XLOC_037637 NA non-coding downstream 845128 8160341 ~ 8163995 (-)
XLOC_037636 NA non-coding downstream 1066526 7941769 ~ 7942597 (-)
XLOC_037631 NA non-coding downstream 1503592 7499260 ~ 7505531 (-)
XLOC_037626 BX942813.1 non-coding downstream 1649639 7357819 ~ 7359484 (-)
XLOC_037651 AL954142.4 non-coding upstream 331103 9355372 ~ 9370866 (-)
XLOC_037663 NA non-coding upstream 1344111 10368380 ~ 10370625 (-)
XLOC_037667 BX000444.1 non-coding upstream 1821649 10845918 ~ 10846549 (-)

Expression


Co-expression Network