XLOC_038036 (hacd2)


Basic Information

Item Value
gene id XLOC_038036
gene name hacd2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38029475 ~ 38042939 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074615
GGCGCTGGATTCATAAGCAGCTTTTTTACATGTCAGCAAGGCCACACGCCTTTATCCACCGGGACCATTGGATGATCCAGTCTTTCTAATGATAGTTCAGTCATGTCGGCACCTGCCATGGGGACCAGCAAAACAGCGCACAGTGAGTCCGGTCACAAGAAGAAAAAGGGCCCCGGAACACTGGCCACAGCATATCTGGTCATTTACAACGTGATTATGACAGCAGGgtGGCTGGTGATCGCTGTTGGTCTTGTTCGAGCATACCTCGCCAGAGGAAGTTATCATGGGCTTTATTACTCCATAGAGAAGCCCCTGAAATTCTTTCAGACCGGTGCACTGCTTGAGATATTGCATTGTGCCGTGGGAATCGTTCCCTCTTCTGTGGTCCTGACTGGATTCCAGGTGATGTCACGGGTGTTTCTTACTTGGGCAGTGACACACAGTGTTAGAGAAGTCCAGAGTGAAGACAGTGTTCTCCTCTTTGTGGTGGCCTGGACAGTCACTGAGATCATCCGATACTCTTTCTACACCTTCAGCCTGCTCAACCACCTGCCTTACCTTATCAAATGGGCAAGgtacacattttttattgtgcTGTACCCGATGGGAGTGATGGGGGAACTTTTAACAATCTACGCCGCACTGCCATATGTGCAGAAAGCAGGGCTTTACTCCATCACCTTGCCTAACAAGTACAACTTCTCATTCGACTACCACACGTTCCTCATCTTCGTCATGATCTCCTACATACCCTTATTCCCTCAGCTCTACTTCCACATGATGCGCCAGAGGAAGAAAGTTCTGGGTCACGTGGAGGAGTACAGCAAAGTGGAATAACCAAGCGGACTGATTGCACAGAAAGCAGAAACAAGCGGACAACCTTTAAAAGCCACACTTCACAGATTctggaaaaaaaatttaagaagaAAAGGCCTCCTTGGCGATTAGAACAGGCCAGTTATGCAGAACGATTGTTAACAATACTATTTTGGTCAAGAACTGTAGCAGTTGGTGATTCTTTTTAGGGTTCATGTAACTTACACAAATGGCTTTGCCTCAATTTAGAGGAAGGGGAATGTCTTTATCATATTAATACATCCGCTACcttgtgacttttttaaaaattaattctaAATGTAGAATTACTGACCAAATATTGTAGCAAGTATCATTCAGAAAAAGGGCAAAACGCAATTAGCTGCATCTGCTGGCTTTTACCAGAAGAAACGTCCCATGATTCTCATGTGTAGTGCGTTCTTTACACTGTATTGAATCTAAATTGATTTCAATATCTCACTTAGTTCATTCCTTTATACTTTGAGTGTTTAATGACTCAAGCCGTACTTGACTTTCACACTACTAGCGTGTCTACTGATTCCCATTATGATTACTGTtagtgttttcttttgttttgtgctGTGCTTTCCTAAAGGATCAATGTTAATCGGTTGTTTTATTCAGTATTGGATATATATTGTTGGTTTGTGGCCGTTTGCGCAGAAAAAGAGGTGAATAACCCAAAGAAATCCTCCGAGTTGCTGGGTCGGATCTACAGTCAATGCTACTAATGTACTAGATGTGCATTTctgtcgtaaaaaaaaaaaaaaaaaaagaggaaactcCTGACACTTTTGGAGCTTGTGAGGAGAGCTACAGGAGCCAATTGGATTCGAGTGCCTCCAGTCATGCTTTTCCAATGAGTCAAATCTAATAATGTGGAGGAAAAACCTGAGAGTTGAGATTTTTAATGCTTCATTGCGCGTCTGCCTAAttgtgaaccgccaacttcagcCCCCCTGCCCCCCTCTCAATGCAAATGAATCCCATATATAATGAAGTGCGAGCCACACTATTGCACAGATAGAGTCTTTTGGTAAGCCTGTTCATGACGAATTAGCATGGGATGCTGAATGAATGCTTGTGAAAAGCTGGAGTGCAACTTTAAATAACACTGCATGTCCAAGTGCTGTGGCTAGACCTTGGTTTGTTGAAGCATGACCCTTAACTCGATCTAAAACGCCAACATTGTCAAGCTTTTGATATTAAAGATCTGCATGGGACCAGCAAACTTTGTATGAATAGTAATACAatgatatatatttacaataaaccATGACATGGGAAGCAAA
>TCONS_00074616
ATATTGCATTGTGCCGTGGGAATCGTTCCCTCTTCTGTGGTCCTGACTGGATTCCAGGTGATGTCACGGGTGTTTCTTACTTGGGCAGTGACACACAGTGTTAGAGAATCTCTGGGTGACTTAAATCTCTCATTTCAGGTCCAGAGTGAAGACAGTGTTCTCCTCTTTGTGGTGGCCTGGACAGTCACTGAGATCATCCGATACTCTTTCTACACCTTCAGCCTGCTCAACCACCTGCCTTACCTTATCAAATGGGCAAGgtacacattttttattgtgcTGTACCCGATGGGAGTGATGGGGGAACTTTTAACAATCTACGCCGCACTGCCATATGTGCAGAAAGCAGGGCTTTACTCCATCACCTTGCCTAACAAGTACAACTTCTCATTCGACTACCACACGTTCCTCATCTTCGTCATGATCTCCTACATACCCTTATTCCCTCAGCTCTACTTCCACATGATGCGCCAGAGGAAGAAAGTTCTGGGTCACGTGGAGGAGTACAGCAAAGTGGAATAACCAAGCGGACTGATTGCACAGAAAGCAGAAACAAGCGGACAACCTTTAAAAGCCACACTTCACAGATTctggaaaaaaaatttaagaagaAAAGGCCTCCTTGGCGATTAGAACAGGCCAGTTATGCAGAACGATTGTTAACAATACTATTTTGGTCAAGAACTGTAGCAGTTGGTGATTCTTTTTAGGGTTCATGTAACTTA
>TCONS_00074617
CATGGGGACCAGCAAAACAGCGCACAGTGAGTCCGGTCACAAGAAGAAAAAGGGCCCCGGAACACTGGCCACAGCATATCTGGTCATTTACAACGTGATTATGACAGCAGGgtGGCTGGTGATCGCTGTTGGTCTTGTTCGAGCATACCTCGCCAGAGGAAGTTATCATGGGCTTTATTACTCCATAGAGAAGCCCCTGAAATTCTTTCAGACCGGTGCACTGCTTGAGATATTGCATTGTGCCGTGGGAATCGTTCCCTCTTCTGTGGTCCTGACTGGATTCCAGGTGATGTCACGGGTGTTTCTTACTTGGGCAGTGACACACAGTGTTAGAGAAGTCCAGAGTGAAGACAGTGTTCTCCTCTTTGTGGTGGCCTGGACAGTCACTGAGATCATCCGATACTCTTTCTACACCTTCAGCCTGCTCAACCACCTGCCTTACCTTATCAAATGGGCAAGgtacacattttttattgtgcTGTACCCGATGGGAGTGATGGGGGAACTTTTAACAATCTACGCCGCACTGCCATATGTGCAGAAAGCAGGGCTTTACTCCATCACCTTGCCTAACAAGTACAACTTCTCATTCGACTACCACACGTTCCTCATCTTCGTCATGATCTCCTACATACCCTGTACGTATTAACTTGTGCACTAAGACATCACGGGCCAGATTTATTGAAAAAGGGCAATGTAGTGCGAGGTAACGATGCGAGAATTTAAACTCAGAAACGTGTCATTGGCGACACCAGTGGACATTGAGTGAATTGCAGCAAGTGTCTTTGTTTGGAAATTGCGCTTGTACACTCATCACTTACTTTGTTTGATGACCTGATACTGATAACAAATGTTCATAGAGCATCCACGCTTCTCAAAATGAAGTTTAGATGTGTGTACAGTAGCAGAGAGAGCACAAACGTGCtgtaagttaaaaaaatacatgcaaatataGAAAAAC

Function

symbol description
hacd2 Predicted to enable 3-hydroxyacyl-CoA dehydratase activity. Predicted to be involved in fatty acid elongation; sphingolipid biosynthetic process; and very long-chain fatty acid biosynthetic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human HACD2 (3-hydroxyacyl-CoA dehydratase 2).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006633 fatty acid biosynthetic process biological_process
GO:0030148 sphingolipid biosynthetic process biological_process
GO:0042761 very long-chain fatty acid biosynthetic process biological_process
GO:0030497 fatty acid elongation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016829 lyase activity molecular_function
GO:0018812 3-hydroxyacyl-CoA dehydratase activity molecular_function
GO:0102343 3-hydroxy-arachidoyl-CoA dehydratase activity molecular_function
GO:0102344 3-hydroxy-behenoyl-CoA dehydratase activity molecular_function
GO:0102345 3-hydroxy-lignoceroyl-CoA dehydratase activity molecular_function
GO:0102158 very-long-chain 3-hydroxyacyl-CoA dehydratase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6053 Predicted to enable 3-hydroxyacyl-CoA dehydratase activity. Predicted to be involved in fatty acid elongation; sphingolipid biosynthetic process; and very long-chain fatty acid biosynthetic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human HACD2 (3-hydroxyacyl-CoA dehydratase 2).

Ensembl:

ensembl_id ENSDARG00000014806

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074615 False 2129 mRNA 0.43 7 38029475 38042939
TCONS_00074616 False 725 mRNA 0.45 5 38030564 38036984
TCONS_00074617 True 961 mRNA 0.46 6 38032934 38042823

Neighbor

gene id symbol gene type direction distance location
XLOC_038035 adcy5 coding downstream 7478 37872577 ~ 38021997 (-)
XLOC_038034 BX511075.1 coding downstream 209263 37817266 ~ 37820212 (-)
XLOC_038033 sema5ba coding downstream 279502 37481434 ~ 37749973 (-)
XLOC_038032 hspbap1 coding downstream 661998 37341240 ~ 37367477 (-)
XLOC_038031 NA coding downstream 892219 37118184 ~ 37137256 (-)
XLOC_038037 NA coding upstream 27145 38070084 ~ 38071916 (-)
XLOC_038038 si:dkey-219c10.4 coding upstream 97972 38140911 ~ 38156894 (-)
XLOC_038039 BX548038.3 coding upstream 161468 38204407 ~ 38204528 (-)
XLOC_038040 NA coding upstream 308642 38351581 ~ 38352885 (-)
XLOC_038041 ccdc93 coding upstream 310513 38353452 ~ 38368138 (-)
XLOC_038030 NA non-coding downstream 1009004 37015729 ~ 37020471 (-)
XLOC_038029 NA non-coding downstream 1069814 36956993 ~ 36959661 (-)
XLOC_038028 NA non-coding downstream 1088725 36926826 ~ 36940750 (-)
XLOC_038043 BX001051.1 non-coding upstream 426507 38469446 ~ 38469566 (-)
XLOC_038044 NA non-coding upstream 515700 38558639 ~ 38560263 (-)

Expression


Co-expression Network