G1978398


Basic Information

Item Value
gene id G1978398
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36739817 ~ 36741984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2261597
ACACTGTACTGATGTTAAATAGTGATGAAGGACAACGTCACACTGTACTGATGTTAAATAGTGATGAAGGACAACATCACACTGTACTGATGAAGGACAACATCACACTGTACTGATGTTAAATAGTGATGAAGGACAACGTCACACTGTACTGATGTTAAATAGTGATGAAGGACAACGTCACACTGTACTGATGAAGGACAACGTCACACTGTACTGATGTTAAATAGTGATGAAGGACAACGTCACACTGTACTGATGTTAAATAGTGATGAAGGACAACATCACACTGTACTGATGAAGGACAACGTCACACTGTACTGATGTTAAATAATGATGAAGGACAACATAACACTGTACTGATGTTAAATAATGATGAAGGACAACGTCACACTGTACTGATGTTAAATAGTGATGAAGGACAACGTCACACTGTACTGATGTTAAATAGTGATGAAGGACAACATCACACTGTACTGATGAAGGACAACATCACACTGTACTGTTGTTAAATAGTGATGAAGGACAACATCACACTGTACTGATGTTAAATAATGATGAAGGACAACATCACACTGTACTTATGTTAAATAATGATGAAGGACAACATCACACTGTACTGATGTTAAATAATGATGGACAACTGTTTGATTGTAAAATTGCAACCGTTAGGTTAAACCTAATAAGTAGAATATTATTTACCATTGCTGATTGTGCATCTTGTACAACCTTACGTTTCCTAATCTCCTCCATTCTGTCTTGGACGTCACTGAGAGAGGCACTGTAATAGTCAGAGTACTCCTGAGCCAAGTCCTCAAATGTTCCCAATGAGCCATCCTAGAGGAGAAGACATGGTCTGTATGAACAGAGATGAAGACCTACCTCATCACATAGTAAGGATCAACATATCACAGAGCAATAGAGTGCTGGCACAAGCTATCACATCACAG
>TU2261598
GTTAAATAATGATGAAGGACAACATCACACTGTACTGATGAAGGACAACGTCACACTGTACTGATGTTAAATAGTGATGAAGGACAACATAACACTGTACTGATGTTAAATAATGATGAAGGACAACATCACACTGTACTGATGTTAAGTAGTGATGAAGGACAACATCACACTGTACTGATGAAGGACAACGTTACACTGTACTGATGTTAAATAGTGATGAAGGACAACGTCACACTGTACTGATGTTAAATAGTGATGAAGGACAACGTCACACTGTACTGATGTTAAACAGTGATGAAGGACAACGTCACACTGTACTGATGTTAAATAGTGATGAAGGACAACGTCACACTGTACTGATGAAGGACAACGTCACACTGTACTGATGTTAAATAGTGATGAAGGACAACATCACACTGTACTGATGTTAAATAGTGATGAAGGACAACGTCACACTGTACTGATGTTAAATAGTGATGAAGGACAACGTCACACTGTACTGATGAAGGACAACGTCACACTGTACTGATGTTAAATAGTGATGAAGGACAACGTCACACTGTACTGATGTTAAATAGTGATGAAGGACAACATCACACTGTACTGATGAAGGACAACGTCACACTGTACTGATGTTAAATAGTGATGAAGGACAACATAACACTGTACTGATGTTAAATAATGATGAAGGACAACATCACACTGTACTGATGAAGGACAACGTCACACTGTACTGATGTTAAATAGTGATGAAGGACAACATAACACTGTAC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106593042

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2261597 False 950 lncRNA 0.38 3 36739817 36741984
TU2261598 True 776 lncRNA 0.38 2 36740024 36741054

Neighbor

gene id symbol gene type direction distance location
ddo ddo coding upstream 20162 36712283 ~ 36719655 (+)
trnal-uaa-61 NA coding upstream 40126 36699609 ~ 36699691 (+)
LOC110505858 LOC106611340 coding upstream 42626 36693964 ~ 36697191 (+)
rmnd1 LOC106611322 coding upstream 83939 36645560 ~ 36655878 (+)
LOC110504238 LOC106611323 coding upstream 108765 36449259 ~ 36631052 (+)
LOC118944353 NA coding downstream 108889 36850873 ~ 36852603 (+)
LOC110505865 LOC106611339 coding downstream 226517 36968501 ~ 36988155 (+)
LOC110505864 LOC106611316 coding downstream 245980 36987964 ~ 36993882 (+)
LOC110505867 LOC106611342 coding downstream 294269 37036253 ~ 37055807 (+)
vsnl1b visl1 coding downstream 314500 37056484 ~ 37065888 (+)
G1978368 NA non-coding upstream 30990 36707499 ~ 36708827 (+)
G1978312 NA non-coding upstream 246859 36492051 ~ 36492958 (+)
G1978280 LOC106611324 non-coding upstream 305145 36434137 ~ 36434672 (+)
G1978249 NA non-coding upstream 379870 36359704 ~ 36359947 (+)
G1978181 NA non-coding upstream 518709 36220756 ~ 36221108 (+)
G1978428 NA non-coding downstream 36195 36778179 ~ 36778405 (+)
G1978440 NA non-coding downstream 53670 36795654 ~ 36799376 (+)
G1978458 NA non-coding downstream 95787 36837771 ~ 36869823 (+)
G1978477 NA non-coding downstream 124655 36866639 ~ 36867130 (+)
G1978463 NA non-coding downstream 127954 36869938 ~ 36874367 (+)
LOC110505847 LOC106611313 other upstream 344601 36376220 ~ 36824709 (+)
G1978080 NA other upstream 712080 36026533 ~ 36027737 (+)
G1976689 NA other upstream 2008506 34730027 ~ 34731311 (+)
G1976680 NA other upstream 2035923 34701980 ~ 34703894 (+)
G1976575 NA other upstream 2257896 34481519 ~ 34481921 (+)
LOC110504241 dnah14 other downstream 476277 37161387 ~ 37222396 (+)
hivep2b LOC106611354 other downstream 522796 37264780 ~ 37311200 (+)
G1980026 NA other downstream 979150 37721134 ~ 37729904 (+)
G1980792 NA other downstream 1786623 38528607 ~ 38529105 (+)
LOC110505893 dio2 other downstream 1823894 38565810 ~ 38575881 (+)

Expression


Co-expression Network