LOC110508060 (LOC106581495)


Basic Information

Item Value
gene id LOC110508060
gene name LOC106581495
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42484856 ~ 42492905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040057.1
ggagagagaacatctCCACACATTTTGTCACTTTGCTCTAGTGTCAGATCAGATTGACAGtgatttaaagagagagagagaagggtatttTCATGCATTTCTCTGTCTTGAAGAGCCCAAACCCCTGCATTCCAAGATAGAGAAGAAGTCACGGTCCTCCAGGATCCTCTATCAGGACCCATCAGTCTCAACCTCCCCCTGGCCTACTCAGGTGGGTTCACTTAGACACATCAAACAGGCTTACACCCAAAACAAAATAGAATAAGATATTACAACTTGTGTAATTTTGATTGTTAAAAATGTTAAGTTTtgttaattgtaaaaaaaaaaatgtatcctggCTGTACGTGGTTCCAAAGTTCGTCTGCAGTCCATTTTGTGAGTGTATTCAtcatcattttttaaattcaattGAATAATGTATTCTGAATATCCAAACAAGTTGTTTTGTATGGGAGGGCAGCTATATTATCTCTAAGCCAGTCATCATTACAGTAAGTAATGGATGAAATTAGGaagtatacagtactgtacaactTTCACCTTTTTTCATTTTGCTTCATACGTCACAGCCCTAGATATGGACAGCACAACAGGATTCGCCCGGACCCCTGTCAATCACAACCACACCAACAGCAGCTGTTCCCGTGACAACGTGCTGAAGACTGTGGTGTTTCCtgttctctactccctcctcttcctgttGGGCCTGTCCCTCAACGGCCTGGCAGTGTGGGTGTTCTTCAGCATCCCCAGCCGCTCCCACTTCATCATCTACCTCAAGAACATTGTGGTGGCCGACGTCCTCATGACCCTCACCTTCCCCTTCAAGGTGCTGTCTGACTCCAACATGGCGTCCGTGGGTCTGCGTGTCTTCGTCTGTCGTGTCTCCTCTGTGCTCTTCTATCTCACCATGTACATCAGCATCCTCTTCTTTGGCCTCATCAGCATCGACCGCTGCAGGAAGACCCTCCAGCCCTTCAAGGGGACCAACGCGGCTCGTCTGTCCCACAGGAAACTGCTCTCTGGGGTTATCTGGTGCTCCCTGCTGGCCCTCTCCTTGCCCAACATGGTCCTGACCAGCCGCAGCCCCACCTCAGTCTACTTCAAGTGCAGTGATCTGAAGACGGCGGCTGGGCTGCATTGGCATGAGGTGGTCAACCACGTGTGCCAGGTCATCTTCTGGGGCAACCTGGTGACGGTGATAGTGTGTTATGCCCTCATCACCAAAGAGCTGTACAGTTCCTACGCCCGCGCCAACGCTTACTGTGCTGGTGGAGCCAGCAGAGCTGGTACTGGTAAAGGACAGCGCCAGCCCCAGAGAAAGACTGTGAGTTCAAACGTCTTCCTGGTGCTGGCTGTGTTCTTTGTGTGCTTCGTGCCGTTCCATTTCTCCCGCGTGCCGTACACCATGAGCCAGACGCGGGGACGCATGTTTGACTGTAACCTCAAGCTGTTCTTCTTCCAATTAAAGGAGAGTACACTCTGGCTGTCCTCCCTCAACTCCCTCCTGGACCCTCTCATCTACTTCTTCCTCTGTAAGTCCTTCAGGACCACCCTGTTCAAGACGCTCCGTCTCCCACCTGGGACCTGTAGCTGGCTCACTGGGAGAGGGCCGGACCCCAACACAGGCAGTACCCCTCTGGGAGACTCCTCTGCTTGACTGTAGCGAACTAAAGCTCTCTTCTGAAGGACTTCCATGTATTGTGGTCTGATGAATGTTTCACAGAGGATCATACTGCCCTCTACTGTAAGGCTGACGGAAACATCAACTGTGTGTTGATTGTAGCTCTGTCTGGGCAATGGAAAGAGTAGAGTAGGAAACTCTGCACAGACCAGTGATAATTACAATAATATGCAAACCAGTCTGTAACACCAGTCTGTAACACCAGTCTGTAACATTTTGTAGAATGTCATAACCCCCTCTAAATAACCTCATGCCAAAGGAAATCACCTAATCACCATGTCTGTCTCATAACAGCTTAGTTCCCCATACCGGCATTCTGCTTTGACCTCGTTCTTTTTTAGGCTTCAGGAACTGAAATAAGAGATATGTAATTATGTGTAACCATGGCACAGCACGTATGCCTATAATGGACAGCAAAACGTCCTGTACTACATAAACTTGTGaaatctaaatatttttttctctcccattCGTTGATCCATGTCTTTAACCATTCTTCAACAAAACAATATGATACTGAGGGAAAAATCCCCTGATTTCTCGGATGCATTGAAAGCCAGATGTGCTGTATGTTTAGACAGACAGTATACAACCTTTTAACAGATGGCCTAAGGGCAGGTGGGAGGGAGGCTGCTACTTACTGCTGTACAGTGACCACAGAGGAACCTAGAAAAACAAGCTGTGAGTGGCCGAAGGCTTTCCGTGGAAGTAGCAAGATGTGAAACAACACCAGTAAAAACCACACTGCGAAAGACAGCTGAAAGTTAACGTGAAAACAATAGTTCATGTGAAAGAaatggtgtgtgtgcatgagagagagaaacatgggatcaacacgtCTGATCTTTTAAATAATAATTAGTTCCAGgatagaaaatgtaaaaaaaacaccaaCCTCCCTGTGAAAATATAACAAACATACAGAAACTCCCTAACCTGCCGAATCCAGGTCACTGGTAGGGGAAATACCATCTGCATGGGCAGATGCTAACAGCAGCAGTTCCATCAGTCCCATCATATGGCTCAGGTGGTAGAACATGGCTCTTGCAATGCCaaaattgtgggtttgattcctgggtcacccacacacaaaatatatgcatgcatgactgtcaGTAACTTTGGATAAAATCATCTGCTAAATTGCATGATATTGTTATATTATAAGAAGTTTGACAAACAAGGGTGGCTTTTTTTTCAGTTGTGGTCAAAAAGCCAAAGATATTGATAACTAACCCTGTGCGTGAGCTCTTATTTTACCACTTCCCCATCTTCAGGAAGTGTATTAGGTGACGTAACAAACGCAGGCCCAATACATCGCAGTAACATATCTCACACGAAAGACATCGTAGTGACTTTCCTCCATGATAAGATGGTTTTTCTCAACTTCACCGATTCCTCAAAACTAGTAGCCACAATGGCATCACATTCCCCTCCAAAGGACTGTGGCTTTAATGAAGATACCTTAAATATGGCTATATCAAGTCTCTACTTCCTGTTGTTCATCCCGGCCCTCATCATCAATGGGGTAGCAGTCTGGGTCTGCATGCAACTTCGTTCAAAGTCCACCTTCATGGTGTATCTGAAGAACCTTCTGGCCGCTGACCTTCTCATGACCCTGACCATCCCTGTCAAAGCAGCCAATATCCTGCCCAGCACTCCACTGACTCTGAAGGCCTTTGCCTGTCGCTACTCTGATGTTCTTTTTTACCTCTGTATGTACATGAGCATCATTCTGTTGGGCCTCATCAGTCTGGACCGCTTCTTCAAGATCGTCAGGCCCTGTGGCAGGTTGTTGGGTCAGAACATTGTCTTCGGCAAAGTGCTGGCTGCTTCCATCTGGGTGGTGCTGTTGTCCACTGCTGTCATTCCAACCATGATCCTGACCAATCAGGATCCCACAAACAAGACTAAACTATTCTGTATGGCAATGAAGAGCAATGCAGGACAATATTTCCACAGTGGCGTGGTCAAATTAAACAACGCAATCTTCTGGGTGGTGTGTGTTCTTATTTGCTTCTGCTACATGTGCATAGCAAGGAAGGTTTTTCAATCATACAGGAAATCAGGAAGCAGCAATGACGAAGGGAGGCATAAGACCAAAGTGCGTGTGTTTTTGGTTCTGGTGGTTTTCCTGACGTGTTTCGGACCCTACCACGCCATACGGCTCCCCTACACCTTGCTTCAGGTTACCTCAACAACCAGCTGCACTAAGGTCACCTTACAGATCTCTAAGGAGTTCACCTTGTGGATGTCAGCCACGAACGTCTGTCTGGACCCTCTCATCTACTTCTTCCTCTGTAAGCCCTTCAGGATCACCCTGTTCAAGACGCTCCGTCTCCCACCTGGGACCTGTAGCTGGCTCACTGGGAGAGGACCCAACACAATAGAGGATCAGACCCCAACACAGGAGGGAGACTCCTGTGCCTGTACAGAAAATTAAAACTCTTTGGAAATATCTACTTCATGTTGTAAGATGTTCTGTTTGACAGAGTATAATACTGCTACCTGGTGGAGGGTAAACTATCCAAAGAGTTATACTAGAAAGGAATCCACCAGGTGTAATGTACTATCCTACTCTTTATATTAGAaatgctacgttacagccttattctaaaacagaaTAACTACATTTTtaccctcataaatctacacacaatacccaataatggaGGGCCGTACAGGCCCCATTTAACATCGGTGTGGTTGTAGTGGAGCGAgattcttggtgtccacatcaccaacaaactgtcatggtccaaacatcccaagacagtcgtgaagagggtactACAACGCCTTTTCGGCGTTGGgtactcagatcctcaaaaagttatacagctgcaccatcgagagcatcctgaccggttgcatcaccgcctggtatggcaactacccggcatctgaccgtaaggcg
>XM_021588510.2
gagagaacatctCCACACATTTTGTCACTTTGCTCTAGTGTCAGATCAGATTGACAGtgatttaaagagagagagagaagggtatttTCATGCATTTCTCTGTCTTGAAGAGCCCAAACCCCTGCATTCCAAGATAGAGAAGAAGTCACGGTCCTCCAGGATCCTCTATCAGGACCCATCAGTCTCAACCTCCCCCTGGCCTACTCAGCCCTAGATATGGACAGCACAACAGGATTCGCCCGGACCCCTGTCAATCACAACCACACCAACAGCAGCTGTTCCCGTGACAACGTGCTGAAGACTGTGGTGTTTCCtgttctctactccctcctcttcctgttGGGCCTGTCCCTCAACGGCCTGGCAGTGTGGGTGTTCTTCAGCATCCCCAGCCGCTCCCACTTCATCATCTACCTCAAGAACATTGTGGTGGCCGACGTCCTCATGACCCTCACCTTCCCCTTCAAGGTGCTGTCTGACTCCAACATGGCGTCCGTGGGTCTGCGTGTCTTCGTCTGTCGTGTCTCCTCTGTGCTCTTCTATCTCACCATGTACATCAGCATCCTCTTCTTTGGCCTCATCAGCATCGACCGCTGCAGGAAGACCCTCCAGCCCTTCAAGGGGACCAACGCGGCTCGTCTGTCCCACAGGAAACTGCTCTCTGGGGTTATCTGGTGCTCCCTGCTGGCCCTCTCCTTGCCCAACATGGTCCTGACCAGCCGCAGCCCCACCTCAGTCTACTTCAAGTGCAGTGATCTGAAGACGGCGGCTGGGCTGCATTGGCATGAGGTGGTCAACCACGTGTGCCAGGTCATCTTCTGGGGCAACCTGGTGACGGTGATAGTGTGTTATGCCCTCATCACCAAAGAGCTGTACAGTTCCTACGCCCGCGCCAACGCTTACTGTGCTGGTGGAGCCAGCAGAGCTGGTACTGGTAAAGGACAGCGCCAGCCCCAGAGAAAGACTGTGAGTTCAAACGTCTTCCTGGTGCTGGCTGTGTTCTTTGTGTGCTTCGTGCCGTTCCATTTCTCCCGCGTGCCGTACACCATGAGCCAGACGCGGGGACGCATGTTTGACTGTAACCTCAAGCTGTTCTTCTTCCAATTAAAGGAGAGTACACTCTGGCTGTCCTCCCTCAACTCCCTCCTGGACCCTCTCATCTACTTCTTCCTCTGTAAGTCCTTCAGGACCACCCTGTTCAAGACGCTCCGTCTCCCACCTGGGACCTGTAGCTGGCTCACTGGGAGAGGGCCGGACCCCAACACAGGCAGTACCCCTCTGGGAGACTCCTCTGCTTGACTGTAGCGAACTAAAGCTCTCTTCTGAAGGACTTCCATGTATTGTGGTCTGATGAATGTTTCACAGAGGATCATACTGCCCTCTACTGTAAGGCTGACGGAAACATCAACTGTGTGTTGATTGTAGCTCTGTCTGGGCAATGGAAAGAGTAGAGTAGGAAACTCTGCACAGACCAGTGATAATTACAATAATATGCAAACCAGTCTGTAACACCAGTCTGTAACACCAGTCTGTAACATTTTGTAGAATGTCATAACCCCCTCTAAATAACCTCATGCCAAAGGAAATCACCTAATCACCATGTCTGTCTCATAACAGCTTAGTTCCCCATACCGGCATTCTGCTTTGACCTCGTTCTTTTTTAGGCTTCAGGAACTGAAATAAGAGATATGTAATTATGTGTAACCATGGCACAGCACGTATGCCTATAATGGACAGCAAAACGTCCTGTACTACATAAACTTGTGaaatctaaatatttttttctctcccattCGTTGATCCATGTCTTTAACCATTCTTCAACAAAACAATATGATACTGAGGGAAAAATCCCCTGATTTCTCGGATGCATTGAAAGCCAGATGTGCTGTATGTTTAGACAGACAGTATACAACCTTTTAACAGATGGCCTAAGGGCAGGTGGGAGGGAGGCTGCTACTTACTGCTGTACAGTGACCACAGAGGAACCTAGAAAAACAAGCTGTGAGTGGCCGAAGGCTTTCCGTGGAAGTAGCAAGATGTGAAACAACACCAGTAAAAACCACACTGCGAAAGACAGCTGAAAGTTAACGTGAAAACAATAGTTCATGTGAAAGAaatggtgtgtgtgcatgagagagagaaacatgggatcaacacgtCTGATCTTTTAAATAATAATTAGTTCCAGgatagaaaatgtaaaaaaaacaccaaCCTCCCTGTGAAAATATAACAAACATACAGAAACTCCCTAACCTGCCGAATCCAGGTCACTGGTAGGGGAAATACCATCTGCATGGGCAGATGCTAACAGCAGCAGTTCCATCAGTCCCATCATATGGCTCAGGTGGTAGAACATGGCTCTTGCAATGCCaaaattgtgggtttgattcctgggtcacccacacacaaaatatatgcatgcatgactgtcaGTAACTTTGGATAAAATCATCTGCTAAATTGCATGATATTGTTATATTATAAGAAGTTTGACAAACAAGGGTGGCTTTTTTTTCAGTTGTGGTCAAAAAGCCAAAGATATTGATAACTAACCCTGTGCGTGAGCTCTTATTTTACCACTTCCCCATCTTCAGGAAGTGTATTAGGTGACGTAACAAACGCAGGCCCAATACATCGCAGTAACATATCTCACACGAAAGACATCGTAGTGACTTTCCTCCATGATAAGATGGTTTTTCTCAACTTCACCGGTGAGTTTCCTTATTTATTTATAATAACACATCATAGACATTTTTTTCTTAAATAATATTGTTCGTAAATATCCCAAATCTGACAAAAGGTTGCCTTTGACACAGAAAGAATAAGCTGTGAatttttttgagaaatgtttaTTGTGAACTTTATGAATCACAATCATTAGACTTTTATGCTTTCAATTGTATTTTGCAATAACAATAAACTATTAATTCACacaatgaaaatgaaccacaTCGTGGTGTCAAATGTatgttttaattttaaaaaacattaaaggggaaatctgtgtTTGGTATATACATTTTCTGACTTTTTGAAGGAATACTTTAGGATTTtgggtccatgcaacttattatgtgacttgttttcTACAACAAAGCGGTTGAATATTTGTTGACTCAAGACAttccagcttttcatttttaaatatttttacagtggagatcaagtttataaaatGCCTGGCTGGGCAGATGAGACAATGGATTGcgcagtgagatggaacagattaaataggcatttcaacatcatagatttag
>TU2383491
CCTGGGACCTGTAGCTGGCTCACTGGGAGAGGGCCGGACCCCAACACAGGCAGTACCCCTCTGGGAGACTCCTCTGCTTGACTGTAGCGAACTAAAGCTCTCTTCTGAAGGACTTCCATGTATTGTGGTCTGATGAATGTTTCACAGAGGATCATACTGCCCTCTACTGTAAGGCTGACGGAAACATCAACTGTGTGTTGATTGTAGCTCTGTCTGGGCAATGGAAAGAGTAGAGTAGGAAACTCTGCACAGACCAGTGATAATTACAATAATATGCAAACCAGTCTGTAACACCAGTCTGTAACACCAGTCTGTAACATTTTGTAGAATGTCATAACCCCCTCTAAATAACCTCATGCCAAAGGAAATCACCTAATCACCATGTCTGTCTCATAACAGCTTAGTTCCCCATACCGGCATTCTGCTTTGACCTCGTTCTTTTTTAGGCTTCAGGAACTGAAATAAGAGATATGTAATTATGTGTAACCATGGCACAGCACGTATGCCTATAATGGACAGCAAAACGTCCTGTACTACATAAACTTGTGaaatctaaatatttttttctctcccattCGTTGATCCATGTCTTTAACCATTCTTCAACAAAACAATATGATACTGAGGGAAAAATCCCCTGATTTCTCGGATGCATTGAAAGCCAGATGTGCTGTATGTTTAGACAGACAGTATACAACCTTTTAACAGATGGCCTAAGGGCAGGTGGGAGGGAGGCTGCTACTTACTGCTGTACAGTGACCACAGAGGAACCTAGAAAAACAAGCTGTGAGTGGCCGAAGGCTTTCCGTGGAAGTAGCAAGATGTGAAACAACACCAGTAAAAACCACACTGCGAAAGACAGCTGAAAGTTAACGTGAAAACAATAGTTCATGTGAAAGAaatggtgtgtgtgcatgagagagagaaacatgggatcaacacgtCTGATCTTTTAAATAATAATTAGTTCCAGgatagaaaatgtaaaaaaaacaccaaCCTCCCTGTGAAAATATAACAAACATACAGAAACTCCCTAACCTGCCGAATCCAGGTCACTGGTAGGGGAAATACCATCTGCATGGGCAGATGCTAACAGCAGCAGTTCCATCAGTCCCATCATATGGCTCAGGTGGTAGAACATGG

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0035589 G protein-coupled purinergic nucleotide receptor signaling pathway biological_process
GO:0007596 blood coagulation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0045028 G protein-coupled purinergic nucleotide receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040057.1 False 4604 mRNA 0.46 3 42484856 42492905
XM_021588510.2 False 3263 mRNA 0.45 3 42484859 42488600
TU2383491 True 1146 lncRNA 0.43 1 42486556 42487701

Neighbor

gene id symbol gene type direction distance location
LOC110507235 LOC106581497 coding upstream 68720 42398689 ~ 42416136 (+)
LOC110507284 sucnr1 coding upstream 242854 42231358 ~ 42242002 (+)
LOC118944685 NA coding upstream 703020 41778921 ~ 41781836 (+)
dhx36 dhx36 coding upstream 912934 41521446 ~ 41571922 (+)
LOC110507232 LOC106593204 coding upstream 978245 41485189 ~ 41507173 (+)
LOC110507283 LOC106581492 coding downstream 9637 42502542 ~ 42503473 (+)
LOC110508059 LOC106581491 coding downstream 17914 42510819 ~ 42515563 (+)
LOC110508057 LOC106581503 coding downstream 81677 42574582 ~ 42629238 (+)
cux1b LOC106581515 coding downstream 173752 42666657 ~ 42816758 (+)
LOC110508074 sh2b2 coding downstream 344340 42837245 ~ 42871486 (+)
G2084362 NA non-coding upstream 25449 42459190 ~ 42459407 (+)
G2084357 NA non-coding upstream 31368 42451423 ~ 42453488 (+)
G2084353 NA non-coding upstream 50298 42434320 ~ 42434558 (+)
G2084340 NA non-coding upstream 59513 42425143 ~ 42425343 (+)
G2084334 NA non-coding upstream 63181 42421438 ~ 42421675 (+)
G2084397 NA non-coding downstream 3083 42495988 ~ 42497663 (+)
G2084398 NA non-coding downstream 6406 42499311 ~ 42500446 (+)
G2084400 NA non-coding downstream 8710 42501615 ~ 42501828 (+)
G2084401 NA non-coding downstream 9284 42502189 ~ 42502444 (+)
G2084407 LOC106581489 non-coding downstream 26740 42519645 ~ 42519875 (+)
G2084156 NA other upstream 223219 42260523 ~ 42261637 (+)
G2083851 NA other upstream 372820 41971259 ~ 42112036 (+)
G2083239 NA other upstream 1272084 41212204 ~ 41212772 (+)
G2083005 NA other upstream 1500002 40981370 ~ 40984854 (+)
G2084659 NA other downstream 570383 43063288 ~ 43064257 (+)
G2085037 NA other downstream 1039365 43532270 ~ 43532578 (+)
G2085122 NA other downstream 1239490 43732395 ~ 43733894 (+)
G2085314 NA other downstream 1625318 44118223 ~ 44119239 (+)
G2085969 NA other downstream 1915148 44408053 ~ 44410050 (+)
LOC110508061 LOC106581496 coding downstream 3759 42491460 ~ 42492431 (+)
G2084394 NA non-coding downstream 1102 42488803 ~ 42489028 (+)

Expression


Co-expression Network