LOC110508059 (LOC106581491)


Basic Information

Item Value
gene id LOC110508059
gene name LOC106581491
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42510819 ~ 42515563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588508.2
AGTGTGTCCTGCCTGCTGCGTTCGCCGCTCGTTCACCAACTAGTGAAACTGACGCACACTGGCACTGGGAGACTGGCACCATGCCATACTAACCTCTCAGTGGACAAttaaacaggaagagaggaggtacAGGCTCATTCACACAGGCAAAGTCACTCATTGGCAAAGTCATTGGGATTGTGACGAGACAGCCACACACAAGCTCTACGTAGAGACCCAGAGACCTCCTACAGAAAATACCATTACACGTGCATACAGTACGCTGAAATGGACCGGTTTGTTGGTCGGTGTGAAAGCCAATGTGACccttgaaaataaagagaaattGTTAAGTCTTGGAAAGATTGTAAGGAAAAAAACAGCTGAATTGGATATTTCACTTGTCCATATTGAGTGACGTTTGCTGAGTTTTTCTCTTCATATTGAGTGTTCCCTGTGAATTTCACATCTTCAACATTGAAACTTCAATCAAAGGAGGtaCTTCTGGGCGTGAGGATGAACGGCAGCCAATCAAACCTGTCCCTGAAGTGTGTGCGTGACACCAGCGTGACGGCGGTGGTCTTCCCCTGTCTCTACAGCGCCCTCTTCCTGTTTGCGCTGGTACTCAACTGCCTGGCTGCATGGATCTTCTTCAACATCCGTAGCACCACCACCTTCGTGGTCTACCTGAAGAACGTAGTGGTGGCAGACCTGCTGATGACCCTGTCCATTCCGTTGAAGGTCCTCGCGGACGCCGACGTGGGCTCCTGGCGTCTGCGTGCGTTCTACTGCCGCTACTCCGCCGTCCTCTTCTACACCACCATGTACATCAGCATCCTGCTCCTGGGGCTCATCAGCCTGGACCGCTACCTCAAGATAGTCAGGCCCTTTGGGAAGTGCGCCCTCCAGAGGGTCGGGGTGGGACAGGCCTTGAGTGCGGCCGTCTGGGCTGTGATGGTTTCTCTGGCTCTGCCCAATGCCATTCTGAGTGACCGCACACCGCTGTTCTCTGGTGGCCGGCTGAAGTGTACCTCTCTAAAGGGTCAGGCCGGCATGCTGTGGCACGAGGGCTTCAACTACTTCTGCCAAgTGGTGTTTTGGGGAacactggctctgatgctgctgtgttACACCTTCATCAGTCGGAAAGTCTACGAGTCTTACAAAGCCTCGCGTAGTGGTTCCAAAGCGGCCAGCCGCAGGACCAAGGCCAAAGTctttgtggtggtgggggtgttTTTCGTTTGTTTCGCCCCTTTTCATTTCGCCAGGGTGCCCTACACTCTCACCCAGACCCGAAACATAGACAACCACTGTCGGGCGCAAAACGCACTCTACGTTGCCAAGGAGACCACTCTCTGGCTGTCTGCCACAAACGTGTGTCTGGACCCGCTGATCTATGTGTTCCTGTGCAGGGTGTTCCGGAAAAGATTGACTGCCACACTCAAACGCAAGCCCCTCCCCCAGGGCGGTTTGGAGTCGCCCACGGCAACCTCCACTCAGCTGGAGATGTCTCAGATAGTACATAACAGAATGTTGGATGTCAGTTCGGCCTAGAAGCACAAcggacatgtttttttttcccaGCTCTATTAAATTGTAAATATATTTCGGCAAGATGTTAACCCCTGGACAGGTTGTGACCAGAGTAAAgccatcaaatcatttctggataAGTGGCTCTGTTACTAAGACAGTGTTGCAGGTCTAATAGGCTATATAAACAGCAGTGTTCCCACATGACCTCTGTGATAGCCCATTGTGTGTGACGAGTATTTAGAAACAAAATGGCTGGTGTGACATCAGATAACTGCACCAGGGCTTTCTAAATATCATCACCAGACACAAGAGTCAACCCAGGCTAATGTGTCGGTCTCTAATGATCGCAAAGTCATCCTGTCTTTTTTTTCTCAGCGTAATTTACTGTCAGCTCTCACTTCCCTTTTCCTAATCTTCTCCAAAAATTACTTTCCTTCTTCTTAATTTCACCAGAAAGGAAAACAACTTGACTGAGTGCTTTTAGATAATGTGAGTGTGACGATGTAACATACACGCTTACGAAATGgtatgttgtttgtgtgtgtagtataGGGTGATGCAGTCTTTACATGTTGTTGGAAAGCAAGACAAAAGCACAGTTTCTCAGACATCTCATGCAAATACACTACATgtacaaaaatatgtggacagcccttcaaattaATAGATtaagctatttcagccacacccgttgctgacagccatgcattctccatagacaaacattggcagtgggatggccttactgaagagct

Function

NR:

description
P2Y purinoceptor 13-like isoform X1

GO: NA

KEGG:

id description
K04298 P2RY12; P2Y purinoceptor 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588508.2 True 2273 mRNA 0.49 4 42510819 42515563

Neighbor

gene id symbol gene type direction distance location
LOC110507283 LOC106581492 coding upstream 7346 42502542 ~ 42503473 (+)
LOC110508060 LOC106581495 coding upstream 17914 42484856 ~ 42492905 (+)
LOC110508061 LOC106581496 coding upstream 18388 42491460 ~ 42492431 (+)
LOC110507235 LOC106581497 coding upstream 94683 42398689 ~ 42416136 (+)
LOC110507284 sucnr1 coding upstream 268817 42231358 ~ 42242002 (+)
LOC110508057 LOC106581503 coding downstream 59019 42574582 ~ 42629238 (+)
cux1b LOC106581515 coding downstream 151094 42666657 ~ 42816758 (+)
LOC110508074 sh2b2 coding downstream 321682 42837245 ~ 42871486 (+)
LOC110508072 LOC105005600 coding downstream 375396 42890959 ~ 43081678 (+)
LOC110508071 LOC106603399 coding downstream 478131 42993694 ~ 42996810 (+)
G2084401 NA non-coding upstream 8375 42502189 ~ 42502444 (+)
G2084400 NA non-coding upstream 8991 42501615 ~ 42501828 (+)
G2084398 NA non-coding upstream 10373 42499311 ~ 42500446 (+)
G2084397 NA non-coding upstream 13156 42495988 ~ 42497663 (+)
G2084394 NA non-coding upstream 21791 42488803 ~ 42489028 (+)
G2084407 LOC106581489 non-coding downstream 4082 42519645 ~ 42519875 (+)
G2084412 NA non-coding downstream 41546 42557109 ~ 42557308 (+)
G2084455 NA non-coding downstream 77303 42592866 ~ 42594069 (+)
G2084448 NA non-coding downstream 85452 42601015 ~ 42602836 (+)
G2084486 NA non-coding downstream 115005 42630568 ~ 42630781 (+)
G2084156 NA other upstream 249182 42260523 ~ 42261637 (+)
G2083851 NA other upstream 398783 41971259 ~ 42112036 (+)
LOC110507232 LOC106593204 other upstream 1003646 41485189 ~ 41507173 (+)
G2083239 NA other upstream 1298047 41212204 ~ 41212772 (+)
G2083005 NA other upstream 1525965 40981370 ~ 40984854 (+)
G2084659 NA other downstream 547725 43063288 ~ 43064257 (+)
G2085037 NA other downstream 1016707 43532270 ~ 43532578 (+)
G2085122 NA other downstream 1216832 43732395 ~ 43733894 (+)
G2085314 NA other downstream 1602660 44118223 ~ 44119239 (+)
G2085969 NA other downstream 1892490 44408053 ~ 44410050 (+)

Expression


Co-expression Network