LOC110508057 (LOC106581503)


Basic Information

Item Value
gene id LOC110508057
gene name LOC106581503
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42574582 ~ 42629238 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965661.1
CAACGTCAGAGAAGTGTTTAAAACGCAGATTATTCCCTGGGCATGGGTGTCAGTGTAATGCATTTTGACTTGAGTTATTGGATTTATCCAGCGCTCTGTCTTGTAGTCTGTACCATGGCGAACTCATAAACGCTGTACTGTTGACTACTACGGTGTATTTATTCCACATCTGACAAAGATCTAACCCTTCGAAGAGATTCAAACTCTTTTCTTTTTTAAATCAACGGAAGCCTACAGCAACTAGCGTTTTGGAACTCTGTGGAGACGCCATTGGCAATGACATCGCTCCCGTGCGCTCTGTGCATAATATGGATATGTCTGATCTGTCATTCGACGGGAACGGGATTTATTTACCAGTTTCCCGGAGTGACTGGCCAAAGCGTCAACTCGGAGCAGAGCGCGACCACAGGTTCACCAGGCAGCGGATCAAACATTCACCTCAGGAACTGGTGCCAGTACACTGTGTTGAGGACAGTGAAGTGCCAGGTGCATAATGGGACAGAGACCATGGTACAGCGAGTGTTTCAAGGCTGCCGCTGGCCAGGACCCTGCTCCAAACTCATCAGGACCGTGGTCAGGCCGTCGTACAAGGTGGCCTATCGGCAGATCACAGCTCGGGAGTGGAGGTGCTGTCCTGGGTTTGTAGGAGATGAATGTCGAGAAGaGTGTATGAACTGCACTGGCTTCACTGACATAAACAACCGACTGAACTTCATCGAATCCAAGATTAAGCTGCTAGAGGGAGCAGGTTCACCATCACCGTCCTTCAACAACTCAACAGAGGGCTCCAGTGACAACGTCatgtacccccccacccccaccggCCCTCCATCTTACCTGCACCCAGGAGGAAGAGGACCACCGGGGCCAATCGGATCACCAGGAATTCCAGGCCCAGCTGGCGAGGCAGGGGTTCCAGGACAGACCGGCCCCACAGGgccaatgggagagagaggaagaccagGAGAGATCGGACATCCAGGCCCTCCGGGGCCAACGTCCTCCTCTACCCGGCCGAGAGGTGACATGTTTGGGTTCGACGAGCAGGAGGAGACCCGTCTTACTCCAACTCTTCCTGAGTTGGTAGCTGGCCCTCCTGGTCCATCTGGCCCCCTAGGACCTCCAGGTCCCCCTGGACCAATCGGACCAGCAGGAGTTCCAGGTCTCCCAGGGCGAGATGCAGAGGGAGGTCTCCAAGGCAAGGCTGGGAATCCCGGTCCTAAAGGAGACGCAGGGGAGAGGggcccTTCAGGATTACCAGGGGAGCACGGCCAGCCTGGGCAGTCTGGGCAGAAGGGGGAGCCAGGAGAGGGTTTGCCTGAGggggaAGCTGAAGGATTGCAGCAGCTGAGGGAAGCTCTCAAGATCCTGGCAGAGAGAGTTCTGATTCTGGAACACATGATTGGCATCCACGAGAGTCCAGTGGAGTCAGGCTCTGGACTGGAAGGCCTACCAGACTCCTTTTCCTTCCCCGCCATCAAGACCAGACTGGCCGAGTCCGCCATCAAGACCAGACTGGCCGAGTCCACCATCAAGACCAGGCGACTCCAGCCCCTCCAAATCTCCTCCCATCCATCCTCAAGGAAGCACTCTGGTGGCCAGACGGAGACCATGTATTTTTTAAGACACCAATgagtgtcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgatagaAAAGGTGTAGTATCAAAAAGCCTGCAGAAAGTATTAATTTACATAATGCATGAATGGATATATTTTCAGAAATATACTCATATATATTCTCTCTTCTGTGTAGTATTTGTACACAATTTAAATAACATGTTCTGTTGTGAGAGCTGAAACCagaccatgttctgttctgagaGCTGAAACCagaccatgttctgttctgagaGCTGAAACCAGAAcatgttctgtgctgttctgcaGGATTTTGGACAACCTTCCTGCCTACATTATTAAAAATAAGTCGAATGAAACGAATAACTTCTGGTGCATAAAACGAAAATaagtaaaaaatgaaaaaaattgtATTTTGGCTCGGCTGAAACCACCTGGCTCAAACTCTGAGGTGATGTTAGACGTCCTGCTGCTGTGGCTGGGTTCTGGTCTGCTCtgatctgtcctgttctgtctctcttggCATGTCATGTTTCTGATATTGGCTAGAAATAAGTGTGTCTCTGTCATTGGTCATTCACCCTATATGGTCTCATTTAAGAGTGTATTTTCAAGTTCTTATAATAGCACAGTGTATGTTGACGTACTCCTTTTACTGCACACCGTTTTCAGTGTAATACCTGACATGTATGATGTATTGAATACCACGGATTCTGGAGCACCCTCCGGTTGCAACCTTTAAGTGTGATTTAGTAGATGGAAAAAGGGAACGTGCCATTTTGTTGTTACGTGTTCTCTTGCTGTTACTGTGTTAATTCATGTGTCATTCTCTTTTGAATTTGATTGTGAGGGCTATGTGAGGGCTATGTGAGGGCTATGTGAGGGCTGTGTGAGGGCTATGTGATGGCTATGTGAGGGCTATGTGAGGACTATGTGAGGGCTGTGTGAGGGCTATGTGGAGGGCTATGTGAGGACTATGTGAGGGCTCTGTGAGGGCTATGTGAGGACTATGTGAGGGCTCTGTGAGGGCTATGTGAGGACTATGTGAGGGCTCTGTGAGGGCTATGTGAGGACTATGTGAGGGATCTGTGAGGGCTATGTGAGGACTATGTGAGGGCTCTGTGAGGGCTATGTGAGGGCTATGTGAGGGCTATGTGAGGGCTATGTGAGGACTATGTGAGGGCTATGTGAGGGCTATGTGAGGACTATGTGAGGGCTATGGTTGTGGTTGTACTGTCTGTAAGCCATTGCACTCAGTGGATGtgtactgtatctatctctcAATTAAACCCGTTCACACAGTTCACA
>XM_036965662.1
CAACGTCAGAGAAGTGTTTAAAACGCAGATTATTCCCTGGGCATGGGTGTCAGTGTAATGCATTTTGACTTGAGTTATTGGATTTATCCAGCGCTCTGTCTTGTAGTCTGTACCATGGCGAACTCATAAACGCTGTACTGTTGACTACTACGGTGTATTTATTCCACATCTGACAAAGATCTAACCCTTCGAAGAGATTCAAACTCTTTTCTTTTTTAAATCAACGGAAGCCTACAGCAACTAGCGTTTTGGAACTCTGTGGAGACGCCATTGGCAATGACATCGCTCCCGTGCGCTCTGTGCATAATATGGATATGTCTGATCTGTCATTCGACGGGAACGGGATTTATTTACCAGTTTCCCGGAGTGACTGGCCAAAGCGTCAACTCGGAGCAGAGCGCGACCACAGGTTCACCAGGCAGCGGATCAAACATTCACCTCAGGAACTGGTGCCAGTACACTGTGTTGAGGACAGTGAAGTGCCAGGTGCATAATGGGACAGAGACCATGGTACAGCGAGTGTTTCAAGGCTGCCGCTGGCCAGGACCCTGCTCCAAACTCATCAGCTACAGGACCGTGGTCAGGCCGTCGTACAAGGTGGCCTATCGGCAGATCACAGCTCGGGAGTGGAGGTGCTGTCCTGGGTTTGTAGGAGATGAATGTCGAGAAGaGTGTATGAACTGCACTGGCTTCACTGACATAAACAACCGACTGAACTTCATCGAATCCAAGATTAAGCTGCTAGAGGGAGCAGGTTCACCATCACCGTCCTTCAACAACTCAACAGAGGGCTCCAGTGACAACGTCatgtacccccccacccccaccggCCCTCCATCTTACCTGCACCCAGGAGGAAGAGGACCACCGGGGCCAATCGGATCACCAGGAATTCCAGGCCCAGCTGGCGAGGCAGGGGTTCCAGGACAGACCGGCCCCACAGGgccaatgggagagagaggaagaccagGAGAGATCGGACATCCAGGCCCTCCGGGGCCAACGTCCTCCTCTACCCGGCCGAGAGGTGACATGTTTGGGTTCGACGAGCAGGAGGAGACCCGTCTTACTCCAACTCTTCCTGAGTTGGTAGCTGGCCCTCCTGGTCCATCTGGCCCCCTAGGACCTCCAGGTCCCCCTGGACCAATCGGACCAGCAGGAGTTCCAGGTCTCCCAGGGCGAGATggcccTTCAGGATTACCAGGGGAGCACGGCCAGCCTGGGCAGTCTGGGCAGAAGGGGGAGCCAGGAGAGGGTTTGCCTGAGggggaAGCTGAAGGATTGCAGCAGCTGAGGGAAGCTCTCAAGATCCTGGCAGAGAGAGTTCTGATTCTGGAACACATGATTGGCATCCACGAGAGTCCAGTGGAGTCAGGCTCTGGACTGGAAGGCCTACCAGACTCCTTTTCCTTCCCCGCCATCAAGACCAGACTGGCCGAGTCCGCCATCAAGACCAGACTGGCCGAGTCCACCATCAAGACCAGGCGACTCCAGCCCCTCCAAATCTCCTCCCATCCATCCTCAAGGAAGCACTCTGGTGGCCAGACGGAGACCATGTATTTTTTAAGACACCAATgagtgtcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgatagaAAAGGTGTAGTATCAAAAAGCCTGCAGAAAGTATTAATTTACATAATGCATGAATGGATATATTTTCAGAAATATACTCATATATATTCTCTCTTCTGTGTAGTATTTGTACACAATTTAAATAACATGTTCTGTTGTGAGAGCTGAAACCagaccatgttctgttctgagaGCTGAAACCagaccatgttctgttctgagaGCTGAAACCAGAAcatgttctgtgctgttctgcaGGATTTTGGACAACCTTCCTGCCTACATTATTAAAAATAAGTCGAATGAAACGAATAACTTCTGGTGCATAAAACGAAAATaagtaaaaaatgaaaaaaattgtATTTTGGCTCGGCTGAAACCACCTGGCTCAAACTCTGAGGTGATGTTAGACGTCCTGCTGCTGTGGCTGGGTTCTGGTCTGCTCtgatctgtcctgttctgtctctcttggCATGTCATGTTTCTGATATTGGCTAGAAATAAGTGTGTCTCTGTCATTGGTCATTCACCCTATATGGTCTCATTTAAGAGTGTATTTTCAAGTTCTTATAATAGCACAGTGTATGTTGACGTACTCCTTTTACTGCACACCGTTTTCAGTGTAATACCTGACATGTATGATGTATTGAATACCACGGATTCTGGAGCACCCTCCGGTTGCAACCTTTAAGTGTGATTTAGTAGATGGAAAAAGGGAACGTGCCATTTTGTTGTTACGTGTTCTCTTGCTGTTACTGTGTTAATTCATGTGTCATTCTCTTTTGAATTTGATTGTGAGGGCTATGTGAGGGCTATGTGAGGGCTATGTGAGGGCTGTGTGAGGGCTATGTGATGGCTATGTGAGGGCTATGTGAGGACTATGTGAGGGCTGTGTGAGGGCTATGTGGAGGGCTATGTGAGGACTATGTGAGGGCTCTGTGAGGGCTATGTGAGGACTATGTGAGGGCTCTGTGAGGGCTATGTGAGGACTATGTGAGGGCTCTGTGAGGGCTATGTGAGGACTATGTGAGGGATCTGTGAGGGCTATGTGAGGACTATGTGAGGGCTCTGTGAGGGCTATGTGAGGGCTATGTGAGGGCTATGTGAGGGCTATGTGAGGACTATGTGAGGGCTATGTGAGGGCTATGTGAGGACTATGTGAGGGCTATGGTTGTGGTTGTACTGTCTGTAAGCCATTGCACTCAGTGGATGtgtactgtatctatctctcAATTAAACCCGTTCACACAGTTCACA
>XM_036965660.1
AACGTCAGAGAAGTGTTTAAAACGCAGATTATTCCCTGGGCATGGGTGTCAGTGTAATGCATTTTGACTTGAGTTATTGGATTTATCCAGCGCTCTGTCTTGTAGTCTGTACCATGGCGAACTCATAAACGCTGTACTGTTGACTACTACGGTGTATTTATTCCACATCTGACAAAGATCTAACCCTTCGAAGAGATTCAAACTCTTTTCTTTTTTAAATCAACGGAAGCCTACAGCAACTAGCGTTTTGGAACTCTGTGGAGACGCCATTGGCAATGACATCGCTCCCGTGCGCTCTGTGCATAATATGGATATGTCTGATCTGTCATTCGACGGGAACGGGATTTATTTACCAGTTTCCCGGAGTGACTGGCCAAAGCGTCAACTCGGAGCAGAGCGCGACCACAGGTTCACCAGGCAGCGGATCAAACATTCACCTCAGGAACTGGTGCCAGTACACTGTGTTGAGGACAGTGAAGTGCCAGGTGCATAATGGGACAGAGACCATGGTACAGCGAGTGTTTCAAGGCTGCCGCTGGCCAGGACCCTGCTCCAAACTCATCAGCTACAGGACCGTGGTCAGGCCGTCGTACAAGGTGGCCTATCGGCAGATCACAGCTCGGGAGTGGAGGTGCTGTCCTGGGTTTGTAGGAGATGAATGTCGAGAAGaGTGTATGAACTGCACTGGCTTCACTGACATAAACAACCGACTGAACTTCATCGAATCCAAGATTAAGCTGCTAGAGGGAGCAGGTTCACCATCACCGTCCTTCAACAACTCAACAGAGGGCTCCAGTGACAACGTCatgtacccccccacccccaccggCCCTCCATCTTACCTGCACCCAGGAGGAAGAGGACCACCGGGGCCAATCGGATCACCAGGAATTCCAGGCCCAGCTGGCGAGGCAGGGGTTCCAGGACAGACCGGCCCCACAGGgccaatgggagagagaggaagaccagGAGAGATCGGACATCCAGGCCCTCCGGGGCCAACGTCCTCCTCTACCCGGCCGAGAGGTGACATGTTTGGGTTCGACGAGCAGGAGGAGACCCGTCTTACTCCAACTCTTCCTGAGTTGGTAGCTGGCCCTCCTGGTCCATCTGGCCCCCTAGGACCTCCAGGTCCCCCTGGACCAATCGGACCAGCAGGAGTTCCAGGTCTCCCAGGGCGAGATGCAGAGGGAGGTCTCCAAGGCAAGGCTGGGAATCCCGGTCCTAAAGGAGACGCAGGGGAGAGGggcccTTCAGGATTACCAGGGGAGCACGGCCAGCCTGGGCAGTCTGGGCAGAAGGGGGAGCCAGGAGAGGGTTTGCCTGAGggggaAGCTGAAGGATTGCAGCAGCTGAGGGAAGCTCTCAAGATCCTGGCAGAGAGAGTTCTGATTCTGGAACACATGATTGGCATCCACGAGAGTCCAGTGGAGTCAGGCTCTGGACTGGAAGGCCTACCAGACTCCTTTTCCTTCCCCGCCATCAAGACCAGACTGGCCGAGTCCGCCATCAAGACCAGACTGGCCGAGTCCACCATCAAGACCAGGCGACTCCAGCCCCTCCAAATCTCCTCCCATCCATCCTCAAGGAAGCACTCTGGTGGCCAGACGGAGACCATGTATTTTTTAAGACACCAATgagtgtcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgatagaAAAGGTGTAGTATCAAAAAGCCTGCAGAAAGTATTAATTTACATAATGCATGAATGGATATATTTTCAGAAATATACTCATATATATTCTCTCTTCTGTGTAGTATTTGTACACAATTTAAATAACATGTTCTGTTGTGAGAGCTGAAACCagaccatgttctgttctgagaGCTGAAACCagaccatgttctgttctgagaGCTGAAACCAGAAcatgttctgtgctgttctgcaGGATTTTGGACAACCTTCCTGCCTACATTATTAAAAATAAGTCGAATGAAACGAATAACTTCTGGTGCATAAAACGAAAATaagtaaaaaatgaaaaaaattgtATTTTGGCTCGGCTGAAACCACCTGGCTCAAACTCTGAGGTGATGTTAGACGTCCTGCTGCTGTGGCTGGGTTCTGGTCTGCTCtgatctgtcctgttctgtctctcttggCATGTCATGTTTCTGATATTGGCTAGAAATAAGTGTGTCTCTGTCATTGGTCATTCACCCTATATGGTCTCATTTAAGAGTGTATTTTCAAGTTCTTATAATAGCACAGTGTATGTTGACGTACTCCTTTTACTGCACACCGTTTTCAGTGTAATACCTGACATGTATGATGTATTGAATACCACGGATTCTGGAGCACCCTCCGGTTGCAACCTTTAAGTGTGATTTAGTAGATGGAAAAAGGGAACGTGCCATTTTGTTGTTACGTGTTCTCTTGCTGTTACTGTGTTAATTCATGTGTCATTCTCTTTTGAATTTGATTGTGAGGGCTATGTGAGGGCTATGTGAGGGCTATGTGAGGGCTGTGTGAGGGCTATGTGATGGCTATGTGAGGGCTATGTGAGGACTATGTGAGGGCTGTGTGAGGGCTATGTGGAGGGCTATGTGAGGACTATGTGAGGGCTCTGTGAGGGCTATGTGAGGACTATGTGAGGGCTCTGTGAGGGCTATGTGAGGACTATGTGAGGGCTCTGTGAGGGCTATGTGAGGACTATGTGAGGGATCTGTGAGGGCTATGTGAGGACTATGTGAGGGCTCTGTGAGGGCTATGTGAGGGCTATGTGAGGGCTATGTGAGGGCTATGTGAGGACTATGTGAGGGCTATGTGAGGGCTATGTGAGGACTATGTGAGGGCTATGGTTGTGGTTGTACTGTCTGTAAGCCATTGCACTCAGTGGATGtgtactgtatctatctctcAATTAAACCCGTTCACACAGTTCACA

Function

NR:

description
PREDICTED: collagen alpha-1(XXVI) chain-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965661.1 False 2936 mRNA 0.50 14 42574582 42629238
XM_036965662.1 False 2879 mRNA 0.50 13 42574582 42629238
XM_036965660.1 True 2941 mRNA 0.50 14 42574583 42629238

Neighbor

gene id symbol gene type direction distance location
LOC110508059 LOC106581491 coding upstream 59019 42510819 ~ 42515563 (+)
LOC110507283 LOC106581492 coding upstream 71109 42502542 ~ 42503473 (+)
LOC110508060 LOC106581495 coding upstream 81677 42484856 ~ 42492905 (+)
LOC110508061 LOC106581496 coding upstream 82151 42491460 ~ 42492431 (+)
LOC110507235 LOC106581497 coding upstream 158446 42398689 ~ 42416136 (+)
cux1b LOC106581515 coding downstream 37419 42666657 ~ 42816758 (+)
LOC110508074 sh2b2 coding downstream 208007 42837245 ~ 42871486 (+)
LOC110508072 LOC105005600 coding downstream 261721 42890959 ~ 43081678 (+)
LOC110508071 LOC106603399 coding downstream 364456 42993694 ~ 42996810 (+)
LOC118944686 NA coding downstream 461911 43091149 ~ 43092189 (+)
G2084412 NA non-coding upstream 17274 42557109 ~ 42557308 (+)
G2084407 LOC106581489 non-coding upstream 54707 42519645 ~ 42519875 (+)
G2084401 NA non-coding upstream 72138 42502189 ~ 42502444 (+)
G2084400 NA non-coding upstream 72754 42501615 ~ 42501828 (+)
G2084398 NA non-coding upstream 74136 42499311 ~ 42500446 (+)
G2084486 NA non-coding downstream 1330 42630568 ~ 42630781 (+)
G2084492 NA non-coding downstream 8767 42638005 ~ 42638227 (+)
G2084493 NA non-coding downstream 11407 42640645 ~ 42640875 (+)
G2084497 NA non-coding downstream 15178 42644416 ~ 42644634 (+)
G2084517 NA non-coding downstream 33451 42662689 ~ 42662945 (+)
G2084156 NA other upstream 312945 42260523 ~ 42261637 (+)
G2083851 NA other upstream 462546 41971259 ~ 42112036 (+)
LOC110507232 LOC106593204 other upstream 1067409 41485189 ~ 41507173 (+)
G2083239 NA other upstream 1361810 41212204 ~ 41212772 (+)
G2083005 NA other upstream 1589728 40981370 ~ 40984854 (+)
G2084659 NA other downstream 434050 43063288 ~ 43064257 (+)
G2085037 NA other downstream 903032 43532270 ~ 43532578 (+)
G2085122 NA other downstream 1103157 43732395 ~ 43733894 (+)
G2085314 NA other downstream 1488985 44118223 ~ 44119239 (+)
G2085969 NA other downstream 1778815 44408053 ~ 44410050 (+)

Expression


Co-expression Network