LOC110508072 (LOC105005600)


Basic Information

Item Value
gene id LOC110508072
gene name LOC105005600
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42890959 ~ 43081678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965670.1
TCGTCGTCTAGGCGACGTGTTAAACCGTGTCCATTCCTTGTTATCGCCTGTGGTCTTTTAGGCCAATTTGAATGATTGAGTGGAGGGGTAAAAAAAAGATGTTGCATCAGAATGTATTTTGATATGGGGATATAATCTGTTGCGATGAACACTGGGGATTCATGTGTGAAAAAACGGGTGGCCTAGCCTCACCTTTCAAGCGCGTCAACCCCGAGGGAGTCCCACCTTCCAAAAACACGGACGAGGAAATCACGCTACTAGCTTGCCATCCAGCAGCCGATTGAAGCGCGCACTCGACGTTTGGACACCCTTCTGCTCTTTTTTGCCACCGCTCTTTTGAAGATTTGAGAAAATATCAAGAATAAGCGGGgaaaccatcaccaccaccacattcATAAAGGGGCGTTACGGAGAGAGTCGGACAAAGTGTAACATAAGTGATGATGAAAGACCGCACGCAAGAACTTCGACAGGGGAAGGagactgaggaggaagaggaggtggctGTGGGCATGGACAAAGGCTTCATGGATGAATTCTTTGAGCAGgTGGAGGAGATCCGTGTCTTCATTGAGTCCCTGGCTgagaaggtggaggaggtgaAGAGGAAACACAGTGCCATCCTGGCTGCACCCAACCCCGACGAGAAGACGAAGGGGGACCTGGAAGTTCTGATGACAGACATTAAGAAGTTGGCCAATAAAGTTCGCTCCAAACTAAAGAGTATCCAACAGACCATTGAGCAGGAGGAGAGTCAGAACAAGTCTTCAGCTGACCTGAGGATACGCAAGACACAGCACTCCACTCTGTCCCGTAAGTTTGTGGAGGTGATGTCAGAGTACAACGCCACCCAGTCAGACTACAGGGAGCGCTGCAAGGGACGTATTCAGAGACAGCTGGAGATCActGGGAGGAATACAACAAACGAGGAGCTGGAGAGCATGTTAGAGAGCGACAACCCAGCGATCTTCACCTCAGGGatcgtcaTGGACTCCAACATCACCCAGCAGGCGATGAACGAGATCGAGACTCGTCACACTGAGATCATCAAGCTGGAGAACAGCATCCGTGAGCTACATGACATGTTCATGGACATGGCCATGCTGGTGGAGAGCCAGGGGGAGCTGGTGAACAACATTGAGCAGAACGTGTGTAACACCCAGGACTATGTGGAACAGGCCAGAGACAACTACAAGGCTGCCGTCAGCATGCAGAAGGGCGGCCACAGGAAGAGGATCCTGATAGGGGTTTGCCTTGCTGTCTCTCTGACCATCCTCGTCATATCTCTGGCTGTCGGGCTCAGTTAGGGGAACCACCAACATCCAGAC
>XM_036965669.1
TCGTCGTCTAGGCGACGTGTTAAACCGTGTCCATTCCTTGTTATCGCCTGTGGTCTTTTAGGCCAATTTGAATGATTGAGTGGAGGGGTAAAAAAAAGATGTTGCATCAGAATGTATTTTGATATGGGGATATAATCTGTTGCGATGAACACTGGGGATTCATGTGTGAAAAAACGGGTGGCCTAGCCTCACCTTTCAAGCGCGTCAACCCCGAGGGAGTCCCACCTTCCAAAAACACGGACGAGGAAATCACGCTACTAGCTTGCCATCCAGCAGCCGATTGAAGCGCGCACTCGACGTTTGGACACCCTTCTGCTCTTTTTTGCCACCGCTCTTTTGAAGATTTGAGAAAATATCAAGAATAAGCGGGgaaaccatcaccaccaccacattcATAAAGGGGCGTTACGGAGAGAGTCGGACAAAGTGTAACATAAGTGATGATGAAAGACCGCACGCAAGAACTTCGACAGGGGAAGGagactgaggaggaagaggaggtggctGTGGGCATGGACAAAGGCTTCATGGATGAATTCTTTGAGCAGgTGGAGGAGATCCGTGTCTTCATTGAGTCCCTGGCTgagaaggtggaggaggtgaAGAGGAAACACAGTGCCATCCTGGCTGCACCCAACCCCGACGAGAAGACGAAGGGGGACCTGGAAGTTCTGATGACAGACATTAAGAAGTTGGCCAATAAAGTTCGCTCCAAACTAAAGAGTATCCAACAGACCATTGAGCAGGAGGAGAGTCAGAACAAGTCTTCAGCTGACCTGAGGATACGCAAGACACAGCACTCCACTCTGTCCCGTAAGTTTGTGGAGGTGATGTCAGAGTACAACGCCACCCAGTCAGACTACAGGGAGCGCTGCAAGGGACGTATTCAGAGACAGCTGGAGATCActGGGAGGAATACAACAAACGAGGAGCTGGAGAGCATGTTAGAGAGCGACAACCCAGCGATCTTCACCTCAGGGatcgtcaTGGACTCCAACATCACCCAGCAGGCGATGAACGAGATCGAGACTCGTCACACTGAGATCATCAAGCTGGAGAACAGCATCCGTGAGCTACATGACATGTTCATGGACATGGCCATGCTGGTGGAGAGCCAGggGGAGATGATAGACCGTATAGAGTACAATGTGGAGCATTCAGTGGACTATGTGGAGAGGGCCGTGTCAGACACTAAGAAGGCTGTTAAATACCAGAGTAAAGCCCGGCGGAAGAAAATTCTGATCATTATTTGCTGTGTAATTCTGGGAATCGTCATTGCTTCTACAATTGGAGGATACTTAGGTATAGCCTGAGACACACACTGAAGGTCATGTcaggagccacacacacacacacacacacacacacacacacacacatacaggtccACCAGTGGGCCCATTTTCCCTGAATAcaacacacccccacacacacacacacacacatacacacacatacaggtccACCAGTGGGCCCATTTTCCCTGAATAcaacacacccccacacacacacacacacacatacacacacatacaggtccACCAGTGGGCCCATTTTCCCTGAATAcaacacacccccacacacacgcccacacacacacacacacatacaggtccACCAGTGGGTCCGTTTCCCctgaatacaacacacacacacccacacacacgcacacacacacacacacatacaggtccACCAGTGGGCCCATTTCCCCTGAATACAACATCCTGTGTTCCTCAGCACAAAGCTCATTGTGATCAATTAAACACACTCCGTGTACAGGACAAAGATTGTCATTTCTGCATGACTTCCTTctttgtaaatgtgtgtgtttctgtaaagTGTTTATCTGAGTGTTGTGAAAgattttgaaatgtttctaaaatgtatttttttaacggggcggtgaggggggggggggggggggtgtaagaaACTACTGTTATACATACTAACACATTCCAAACGTCCAAATGTTGTGTTGACTCAGTTTTGAAACGCTTATGTATCCTAACAACCCACCTCATTTCAGACTTTTCTTGACACGGTTATTTTGAATATAATCAATATATATAATCAATGAATGGTTATAACCCAGGATCTGacgtcttcccccccccc

Function

NR:

description
PREDICTED: syntaxin-1A isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K04560 STX1A; syntaxin 1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965670.1 False 1328 mRNA 0.51 10 42890959 43078903
XM_036965669.1 True 2121 mRNA 0.48 10 42890959 43081678

Neighbor

gene id symbol gene type direction distance location
LOC110508074 sh2b2 coding upstream 19473 42837245 ~ 42871486 (+)
cux1b LOC106581515 coding upstream 74201 42666657 ~ 42816758 (+)
LOC110508057 LOC106581503 coding upstream 261721 42574582 ~ 42629238 (+)
LOC110508059 LOC106581491 coding upstream 375396 42510819 ~ 42515563 (+)
LOC110507283 LOC106581492 coding upstream 387486 42502542 ~ 42503473 (+)
LOC118944686 NA coding downstream 9471 43091149 ~ 43092189 (+)
LOC110508068 aldh3a2 coding downstream 14965 43096643 ~ 43111668 (+)
LOC110508067 LOC106581512 coding downstream 30119 43111797 ~ 43143108 (+)
LOC118944687 NA coding downstream 109099 43190777 ~ 43218309 (+)
LOC110508082 LOC106613355 coding downstream 111837 43193515 ~ 43293841 (+)
G2084608 NA non-coding upstream 2005 42887479 ~ 42888954 (+)
G2084610 NA non-coding upstream 9002 42880777 ~ 42881957 (+)
G2084598 NA non-coding upstream 24171 42865224 ~ 42866788 (+)
G2084576 NA non-coding upstream 70003 42820694 ~ 42820956 (+)
G2084575 NA non-coding upstream 70288 42820329 ~ 42820671 (+)
G2084604 NA non-coding downstream 1333 43083011 ~ 43085654 (+)
G2084675 NA non-coding downstream 62118 43143796 ~ 43144844 (+)
G2084902 NA non-coding downstream 101456 43183134 ~ 43183334 (+)
G2084916 NA non-coding downstream 117344 43199022 ~ 43199230 (+)
G2084920 NA non-coding downstream 130077 43211755 ~ 43211958 (+)
G2084156 NA other upstream 629322 42260523 ~ 42261637 (+)
G2083851 NA other upstream 778923 41971259 ~ 42112036 (+)
LOC110507232 LOC106593204 other upstream 1383786 41485189 ~ 41507173 (+)
G2083239 NA other upstream 1678187 41212204 ~ 41212772 (+)
G2083005 NA other upstream 1906105 40981370 ~ 40984854 (+)
G2085037 NA other downstream 450592 43532270 ~ 43532578 (+)
G2085122 NA other downstream 650717 43732395 ~ 43733894 (+)
G2085314 NA other downstream 1036545 44118223 ~ 44119239 (+)
G2085969 NA other downstream 1326375 44408053 ~ 44410050 (+)
LOC110508103 LOC106581548 other downstream 2404959 45480328 ~ 45487737 (+)

Expression


Co-expression Network