zgc:110333 (LOC106581535)


Basic Information

Item Value
gene id zgc:110333
gene name LOC106581535
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44088591 ~ 44090215 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588541.2
AGGGTGTATCACCTAGACATTTGTTTCCTGCCCTCTCATTTAGTTCAGCTGGTGAGATAGAGGCAGGAGAGCTGTGACACGCCAGTCCTCGGGTAGGTTCTCTAATCGACAGCCAGCCAAAATGGACCGGTCCTACATGGGCAGTGCCACTGCTTACAGTGTCTACGGGAAGCCGCCTCAGTCCTACTTTGACCCGGCCTACGACGAGAAAGCAGCAAAGTCGTACATGGACTCAGTGTacgaggagaagaagagagtagAGAAGAAGGCTCGCTCCGAGGCCGTCTGCTGCGAGGTCGTGGCGCTGGTCTTCGGATTCGTCGGCCTGATCGGTGTCTCCGCGGTGACCGGCTTGCCCATGTGGAAGGTGACGGCATTTATTCAGGAGAACATCATCGTCATGGAGACGCGCTGGGAGGGCCTGTGGATGAACTGCTATAGACAAGCCAACATCAGGATGCAGTGTAAAGTGTACGACTCTCTGCTGTTCCTCCCTGCGGAGCTGCAGGCTGCCAGAGGCCTCATGTGCTCCTCCGTAGCTGTATCCGCCATCGCCCTGATCCTCTCTGCCGTGGGGATGAAGTGTACCAAGGTGGTGGACCACCGGCCTCGTACCAAACACATCGTCCTGGTGACCGGGGGATGCCTGTTCCTCGTGGGTTGTGTCACCACCATCATCCCAATCTCCTGGACGGCCAACGTGATCATCCGTGACTTCTACAACCCTCTGCTGATCGACGCCCAGCGCAGGGAGCTGGGAGAGGCGCTCTACATTGGATGGGTGACCTCGGCTCTGCTGTTTGTGGCTGGGGTCATACTGCTGTGTCGCCACGCACCCCGGGTAGGAGACGATGAGATGGAGAGGATGGTCAACGGGCCTGGATACATCTACCAGCCTGGAGTGAACTACCAGCCTGGAGTGAACTACCAGCCTGGTTCAGCATACGCGTACCAGCCGTATTCCTACCAACCCAACTACTCAGCTCCACCCGGATCTGTGGTCTACGCTCCTAACCAGTACATGTGAGAGAAACCCAGCCCAGAACAACATGGACAGCTTGAACAGCTTGGAACCAAGCATTAAAATTATAATtaatataacagaactcatattgttaCATAGAATATAATTAATTTGAGTTATTTGAATCCAAGCGTTGTTGAAATGTCCGAgtggggaggaagagacagaggcaCTGAACTGGCCAGAAGTCTCTTGCTGGAAATGGCCCAATCGTTGATTAATtttgttcagagagagagagagagaaaatatcaaTAAGCAGACCTATGTGTAATTCCCTGTATGTGTTGTGTCTATGTGTTCAACTGTAGGTGGGAGTTATGTGTTTAATTGTGTAAATATACTTGTCAGGTATGTGTATAGTGCAAATATTGAGCAAATATTGTCATACCAATGGCTGTGGAATAAAGTGGTTAAGCAAATAGGGCTTCACAAGTTTTCACTAATATTGACCAAACAATTGACCAAACCCCTGTGTTTGTGTTTACCTGCTATTTTCATATGAAAAGGTTTGTTGTTTTCAttatgttttctgttttttacagCAATGGCCTAAATTGACCCCCAATTTGGTTcacaataaaaacatatataaCTTTTT

Function

NR:

description
claudin-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588541.2 True 1625 mRNA 0.49 1 44088591 44090215

Neighbor

gene id symbol gene type direction distance location
LOC110508084 LOC105012849 coding upstream 19006 43873126 ~ 44069585 (+)
LOC118944688 NA coding upstream 190032 43896547 ~ 43898559 (+)
LOC110508083 LOC106581524 coding upstream 243800 43801102 ~ 43844791 (+)
sult3st1 LOC106581508 coding upstream 289553 43779072 ~ 43799038 (+)
si:ch211-167j9.5 LOC106581520 coding upstream 360252 43701561 ~ 43728339 (+)
cldn8 LOC106581534 coding downstream 5229 44095444 ~ 44098036 (+)
LOC110507242 NA coding downstream 9834 44100049 ~ 44101891 (+)
LOC110508097 LOC105006673 coding downstream 21335 44111550 ~ 44232823 (+)
cadm2b LOC106581539 coding downstream 777772 44867987 ~ 45361689 (+)
usp16 usp16 coding downstream 1353690 45443905 ~ 45479066 (+)
G2085283 NA non-coding upstream 25446 44061807 ~ 44063145 (+)
G2085282 NA non-coding upstream 30571 44056743 ~ 44058020 (+)
G2085280 NA non-coding upstream 36695 44051095 ~ 44051896 (+)
G2085278 NA non-coding upstream 46250 44041226 ~ 44042341 (+)
G2085275 NA non-coding upstream 46640 44038808 ~ 44041951 (+)
G2085324 NA non-coding downstream 52322 44142537 ~ 44142949 (+)
G2085337 NA non-coding downstream 81068 44171283 ~ 44172182 (+)
G2085308 NA non-coding downstream 92428 44182643 ~ 44182909 (+)
G2085352 NA non-coding downstream 108837 44199052 ~ 44205726 (+)
G2085357 NA non-coding downstream 130563 44220778 ~ 44221142 (+)
G2085122 NA other upstream 354697 43732395 ~ 43733894 (+)
G2085037 NA other upstream 556013 43532270 ~ 43532578 (+)
G2084659 NA other upstream 1024334 43063288 ~ 43064257 (+)
G2084156 NA other upstream 1826954 42260523 ~ 42261637 (+)
G2083851 NA other upstream 1976555 41971259 ~ 42112036 (+)
G2085314 NA other downstream 28008 44118223 ~ 44119239 (+)
G2085969 NA other downstream 317838 44408053 ~ 44410050 (+)
LOC110508103 LOC106581548 other downstream 1396422 45480328 ~ 45487737 (+)
mtus2b LOC106593344 other downstream 1439241 45493223 ~ 45664305 (+)
G2087149 NA other downstream 1706884 45797099 ~ 45798593 (+)

Expression


Co-expression Network