cldn8 (LOC106581534)


Basic Information

Item Value
gene id cldn8
gene name LOC106581534
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44095444 ~ 44098036 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965492.1
GTACACCTATCACCTACCAGCTCCTCTCGTCTTCCAACAGGATGCAAAACTTCTCCGGAGAGTAATGAGGGAAGCAGCTCCTCACTGTAGTCAGATCTTACTGCCACACCCTTTACGCCTGTTGACTAGGTGGGTTAGTTAGACACTAGTGCGACTCTCCTCAGCCTGTTGACTATTAGGTCTAGGTAAGTTAGGCAGGACAGAGTGAGACCATGGCCAACTCAGCTCTGGAGATCATTGGCTTGTTGCTGTCTCTCATCGGTCTGATCGGGACCGCAGCCAGTACGGGGATGCCCATGTGGCGCGTGACGGCCTTCATCGGCGAGAACATCATCGTCTTCGAGACGCGCTACGAGGGTCTGTGGATGAATTGCTTTAGACAGGCCAACATCAGGATGCAGTGTAAAGTGTACGACTCCCTCCTGGCTCTGCCTCCAGACCTGCAGGCGGCCAGGGGTCTGATGTGCTGTGCCTTGGCTCTGGGAGGGGTGGGGCTGCTCATCTCTATCCTGGGCTTACAGTGCACGGCCTGCATCCGGGACAACGACCGGGCCAAACGCACGGTGCTCATCGTCGCTGGCAGCATGATCCTCGGGGCCTGCGTCTGCGTCGTCATCCCAGTCTCCTGGACGGGTCACACTATAATCCGTGACTTCTACAACCCTCTGCTGATCGACGCCCAGCGCAGGGAGCTGGGAGAGGCTCTCTACATCGGATGGGTCTCCTCTGCCTTCCTCTTCGCCGGCGGCTGCATGTTCTGCTGCTGTAACGTCAAAGAGGATAAAAGGCAAGACAAGTACATGTACTCCAGGAACAGCCCTAGTCAATACATGTCTTACGCCCCTCAACCACAGTACCAGCCCCAGTACCAGCCACAGTACCAGCCCCAGCCTCTACAGAGGCAGCCGTCCAGTAGCAGCTACCCCGGGTCCAACCACTACCCCTCCAGGTACCCCTCGGAACGCAGTGCTGTGGCTTACCTCTGAGTGTTGTGACTAAAGGGGAAGGAAAGGGACTTAGTGTTTTCTACCGACATGGAGGAACCGATATGTTCTTACGAGTACGTTTTGAAAAGAAACCTTTCGGTTGTGTTAAAAGATGAATATCAGCATAAAGTAAGAGACTAAAATGATTGTAATACACTGTGAAACTCACAAAAAGAGGATTAATTGTAAAATTATCATAACATGCATTTCAGTTGAGGAAAGAAAACATGTCTATCGGATTTGTTTGTCAGAAAGCTGTTTAAAGATACTAAATACACTTATAATAGGTTAACTGGTTAACTGGTTAACTGGTTAACTCAAAAAGAGAAGACTTTGAGGGAACCTTaaatcctatttttttttttatataaataatttTTATTATCCTTTGTTTTCATATTTGTATTTACTTTGTATTGGTGTGGTGTATaaggacaatttttttttttttagtgacGTCCCTAAAGATTATTAGTGTAAATATATTTACAAATTGTGTTGCTGTGGTTGTGTGCTTTGTGTAGTAAATGTAGGTTTCTTACACATAATCACCCTGTAGTTACACCAGGTGTTACATAAAATGTAGCTTTTATCATGTAAAAAAGCAATTGTCAAATAATGTGTCCCAAAGGGAACTCTATTCCctaattagtgcactacttttgaccagggccaaaagggaatagggttctgatcaaaagtagtacagtatataggTTTGCCATTAGGGATGCAGCCCATTATCATTcattttattatttcattcctaAAGTATCTGATTAGACAAAATCATCTCCTAATGGCAGAAATGCAGCTGACTGTGTGCTGTAAAGTGACATTTCTGCTCATGTGTTTTGGAGAACAGCAGCACAGGGCTGGCTTTGATCCActggttccccccccccccccccccttgacaaCGGTCCCCCTTGGCAAAGGTCCCCCTTGACAACATCAACAAACTACAAGACAGTCCTGGTTGTGTTAAAACGCCTGTGTTGTTACTGCCATTTTGTAATGTTTGGGAGTAGACAAACAAGGACAGTATCGTTTTGTAATATTATCCCCTGGGGCATCCTATTCTCtacacatagtacactacttttgtctagggtcctggtcaaaagtagtgcactatgtagggaatagggtgcaatttacagggaatagggtaccatttgggacacatcctctcTGTGTTGACAGCTTGATGGTAAGGACTAATGGAAATAAATACAAGGCTGGTTGTTGAAGGTGTGGACCCAGAAGCAGTAGGGTAGAACAGAGGACTTCTGTCAAAGCAAACAGAGCATAACGGACTAAGAACCGGGGCTGGGTTCAATCCCTAGCTCAGCGTTGTAGCGTGATTTGCATATGTTAATAAAAGTGATTTAAtttcaaatgaataaaaaaaaaaaacaacgttaTTCGTTTCAGTTAAGTTGAGATAAATCTTTCAGCCTCTGGAATACGAACAAACTTTTTCTGAATTACTCATTGACATTTCATTATCTGGTGCAAGCTAATGTATATGAAAGGGAAAACCTTCAGAAGCAATGTAAAGACTTTGATTGACACGTTACCGATTAAACGAAACATTGATAACC

Function

NR:

description
claudin-8-like

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965492.1 True 2593 mRNA 0.45 1 44095444 44098036

Neighbor

gene id symbol gene type direction distance location
zgc:110333 LOC106581535 coding upstream 5229 44088591 ~ 44090215 (+)
LOC110508084 LOC105012849 coding upstream 25859 43873126 ~ 44069585 (+)
LOC118944688 NA coding upstream 196885 43896547 ~ 43898559 (+)
LOC110508083 LOC106581524 coding upstream 250653 43801102 ~ 43844791 (+)
sult3st1 LOC106581508 coding upstream 296406 43779072 ~ 43799038 (+)
LOC110507242 NA coding downstream 2013 44100049 ~ 44101891 (+)
LOC110508097 LOC105006673 coding downstream 13514 44111550 ~ 44232823 (+)
cadm2b LOC106581539 coding downstream 769951 44867987 ~ 45361689 (+)
usp16 usp16 coding downstream 1345869 45443905 ~ 45479066 (+)
LOC110508103 LOC106581548 coding downstream 1382292 45480328 ~ 45487737 (+)
G2085283 NA non-coding upstream 32299 44061807 ~ 44063145 (+)
G2085282 NA non-coding upstream 37424 44056743 ~ 44058020 (+)
G2085280 NA non-coding upstream 43548 44051095 ~ 44051896 (+)
G2085278 NA non-coding upstream 53103 44041226 ~ 44042341 (+)
G2085275 NA non-coding upstream 53493 44038808 ~ 44041951 (+)
G2085324 NA non-coding downstream 44501 44142537 ~ 44142949 (+)
G2085337 NA non-coding downstream 73247 44171283 ~ 44172182 (+)
G2085308 NA non-coding downstream 84607 44182643 ~ 44182909 (+)
G2085352 NA non-coding downstream 101016 44199052 ~ 44205726 (+)
G2085357 NA non-coding downstream 122742 44220778 ~ 44221142 (+)
G2085122 NA other upstream 361550 43732395 ~ 43733894 (+)
G2085037 NA other upstream 562866 43532270 ~ 43532578 (+)
G2084659 NA other upstream 1031187 43063288 ~ 43064257 (+)
G2084156 NA other upstream 1833807 42260523 ~ 42261637 (+)
G2083851 NA other upstream 1983408 41971259 ~ 42112036 (+)
G2085314 NA other downstream 20187 44118223 ~ 44119239 (+)
G2085969 NA other downstream 310017 44408053 ~ 44410050 (+)
mtus2b LOC106593344 other downstream 1431420 45493223 ~ 45664305 (+)
G2087149 NA other downstream 1699063 45797099 ~ 45798593 (+)

Expression


Co-expression Network