LOC110508097 (LOC105006673)


Basic Information

Item Value
gene id LOC110508097
gene name LOC105006673
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44111550 ~ 44232823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965396.1
TGAAATATGTGCCCTACAACAAATAAGAAAAAGGCAGATAGATTGACCCAAATCCCCCCTGTCCTCAGATCCCTTGTCTCTCCAACAAAACTGTTAGAATAGTCAAACCCTTCTTCTTTTGAAAGTAAGTAAACTATGGAAAAGCAAAGTAACGTGGGTTTCTTTTTTTTATCGGGCtgtggcagagagaggagaagtatAGCCTGACTCCCTCCGTGGTTAATCTTCCCGGAGCGACTATTCTGAAGATTAGATCTGCGTTTCCCATCACGACTGGAGCAAAGATTTAATCATTCCTCGGTGTACTAAAGCAAAGACGAGTTGTCGAGGTCGGCTGTAGCCAGATTTGAAGTTAATCTTCTGAACGTATCCATGTTTGCGGATCAACACCGGCTTGGCGGTGCCCTCAATTGAGTGTGCGCACGGGGGAGACGCTCGCAGTATCACTGTTCCAAGTATACGCTGCCAACGATGAAAGAGGAGATACATTGTTTTCGGGACTATCTGAAATGGGGAGTCAAAAACTGCTAACACAAATGGGATTCTAGAATTGGAAAACGGGTCTCATTCTGAGTTTTATAAGGAACTATTCCAAAAGGAGAAAATTCGTGTTTTTATTTCTCTCAACATAATGTATAAGAGGAAAAATGTGGGTCGGATGTCGATTTCTGTTCGATACGGATACGAGAACTGGCAAGATATCAGCATGAATTAAaagcagaaagaaagaaaaaacagaCATCAATGTTCATTTTTATTTTGGAGCGAGTACCATGGCGAAAAGGAAGGGACTATTGTTTTCGCTGCTTTACTTGATGGCAGAGTTTTGGCTGAGTTGGCAGCAAGTCCTTAGAATCGGGGGTATCTTTGAGACCCTTGAGAATGAGCCCATTAGTGTGGAGGAGCTGGCCTTTAAATTCGCTGCAACAAACATCAACAGGAACCGGACCTTAATGCCCAACACCACACTGACCTACGACATCCAGAGAATAAACCTCTTCGACAGCTTCGAAGCCTCCAGAAGAGCCTGTGACCAGTTGGCTCTGGGTGTCGGGGCGGTGTTTGGTCCCTCTCACAGCTCCTCCGTCAGTGCTGTCCAGTCCATCTGCAATGCTCTGGAGGTACCTCATATCCAGACCCGGTGGAAACACCCCTCTGTGGACAACAAGGACAGCTTCTACATCAACCTGTACCCAGAGTATGCCTCCATCAGCAGAGCCATACTGGACATCGTACAGTACTACAAGTGGAAGACAGTCACTGTGGTTTACGAGGATGCAACTGGGTTAATTCGTCTTCAGGAGCTGATCAAAGCTCCGTCCAGGTACAGCATCAAGATTAAGATTCGCCAGCTGCCGACGGAGAGTAAAGACGCCCGGCCGTTACTAAAGGAGATGAAGAAGGGGAAAGAGTTCTATGTTATCTTCGACTGTTCCTACCAGACCTCCGCAGACGTACTCAAACAGATCATGTCCATGGGGATGATGACTGAGTATTACCACTTCTTCTTCACTACTCTGGACCTGTTTGCTCTGGACCTGGAGCCGTACAGGTACAGCGGTGTGAACATGACCGGGTTCCGCCTCCTCAACATAGACAACCCCCAGGTCGCCTCCGTGGTCGACAAGTGGTCCATGGAGCGCCAGCAAGCCCCGCCCAAACCAGAGACGGGCATGCTGGATGGCATGATGACGACTGAGGCAGCGTTGATGTATGATGCTGTGTACATGGTGGCAGCAGCCTCCCAGCTCTCCACTCAGATCACTGTCAGCTCACTGCAGTGCCACAGACACAAACCCTGGCGCTTCGGAGCACGATTCATGAACATGTTCAAAGAGGCGACGTGGAACGGTTTGACAGGACAGATCATTATAAACAAGACAGACGGTTTGAGGAAAGACTTTGACCTGGACGTCATCAGTCTGAAGGAAGACGGCTTGGAGAAGATTGGATTGTGGAACTCCAACAACGGCCTTAACCTTACCGAAAGTCTGAAGGATACGGGGACTAACATCACAGATTCCATGGCAAACAGGACTCTGGTCGTCACCACTATCCTGgaaaacccttacgtCATGTACAAGAAGTCTGACAAGCCTCTGTACGGTAACGACCGGTTCGAAGGTTACTGCCTGGACCTGCTGAAGGAGCTGTCCAACATCCTGGGATTTGCCTACGAGGTTAAACTGGTGTCTGATGGGAAGTATGGAGCACAAAACGATAAGGGAGAATGGAACGGCATGGTGCGGGAACTCATAGACCATGTAGCAGACCTGGCTGTGGCTCCTCTGACCATCACCTATGTGAGGGAGAAGGTGATAGACTTCTCTAAACCCTTTATGACCTTGGGAATCAGTATCCTGTACCACAAACCCAACGGCACCAACCCTGGAGTGTTCTCCTTCCTCAATCCCCTGTCTCCTGACATCTGGATGTACGTACTACTGGCCTGCCTCGGAGTCAGCTGTGTCCTGTTTGTCATCGCCAgGTTTACCCCCTATGAGTGGTACAACCCTCACCCCTGTAACCCTGACTCTGACGTGGTGGAGAACAACTTCACTCTCATCAACTCTGTCTGGTTTGGGGTGGGAGCTCTGATGCAGCAAGGATCTGAGCTGATGCCTAAAGCCCTGTCTACGAGGATAGTAGGAGGCATCTGGTGGTTCTTCACCCTCATCATCATCTCCTCTTACACGGCCAACCTGGCTGCCTTCCTCACCGTGGAGAGGATGGACTCTCCCATCGACTCGGCTGACGATCTGGCCAAGCAGACTAAGATAGAGTATGGAGCTGTGAGAGACGGATCAACCATGACCTTCTTCAAGAAATCCAAGATCTCCACCTATGAGAAGATGTGGGCGTTTATGAGCAGCAGGAAGAACACAGCTCTGGTGAAGAACAACAGAGAGGGGATCCAGAGAGTCATGACCACAGACTATGCTCTCCTCATGGAATCCACCAGCATAGAGTACATCAGTCAGAGGAACTGTAACCTCACGCAGATCGGAGGCCTCATAGACTCTAAGGGCTACGGCGTGGGCACTCCCATAGGCTCCCCCTACAGAGACAAAGTGACCATCGCCATCCTGCAGCTCCAGGAAGAAGGGAAGCTCCACATGATGAAGGAGAAGTGGTGGAGAGGGAACGGTTGTCCCGAGGAGGACAGTAAGGAGGCCAGCGCCTTGGGAGTGGAGAACATCGGTGGCATTTTCATAGTGCTAGCAGCCGGACTGGTTCTCTCTGTGTTTGTAGCTATCGGAGAGTTCATTTACAAATCCAGGAAAAACTTGGACATAGAGGAGGTGAGTGTAGGGCAGTGTGAGTGGCATCATAAGTACTAACAGAAAAAAAGGTGCTCCGCGACTGTTATTATGGACCTTCTACATAGAGTAGGTTGCTGTGGACCttatacacacagtcagtcagttgcTATGCACATTatacaatacacacagtcagtcagttgcTATGCACATTatacaatacacacagtcagtcagttgcTATGCACATTatacaatacacacagtcagtcagttgcTATGGACATTatacaatacacacagtcagttgcTATGGACATTatacaatacacacagtcagttgcTATGGACATTATACAGCACATAGAGTTATACCGTTGTTACTGACCTTGTAtaaacacagtcagtcagtcagtcagtcagtcagttgctGTGGACTTTATACATTACAGTACACCCATTCAGACTGTTATGGACTGTACACACAGTCAGTTGCTATGGACCGTACACACAGTCGGTTGCTATGGACCGTGCACACAGGTGGTTGCTATGGACCGTACACACAGTCTGTTGATATGGACCGTATACACAGTCAGTTCCTATGGACCTTAAACACACAAAGTTAGTTGCTTTTATGAATGTTGTTTTCTCGtcaaaggacagctttttttttttatcaggacaacttgtttcatcaggccagcaGTTTGGATTTGGGGAACTGCAGTGcaacaatcacacacaaatgaCTTTATTGTAGAGTAGGCCTAGTGTTTGAGGTACTTTTGATTTAGATAAAAATGAACATTTTTATTCCTTTATTGGCACAATATCTTATTTATAACGAGAGTCGGTTGGGTTTAAGGGAGGCACACCACTTGACTGTCTTGGCCTTGCTGTTTCTgtgtgaaaatgtattattttgtgtCATGACATGATACTGTAGGTAAGTGATGAAGATATAAGGTTTCACTGGAGGTTAATACGCACCATTACTGATCTATAACTTCTTAATTACATTTACTGATCTATAACTTATTGATTACATTTAACTAATGATTAGGTTTGAGGATATCATGTTTTGCTtgcaaatgtttgcaaatttacatCCAGGTATTTGTACAGCATAACGTAACAGTATTGCTTCTTCTGAACACCTTTGCTTGTATTcatatatatatgaaaatatctgaatgATTGTATGTACATGTGAGTGAGGTTTTTCCGAATCATTTATGGATGAGATGCCCCTTGAGACTTTATTCATTGAGTCGCTTTCATTCGTTGCTTTTTGTATCATTTGACGTTCATGAAAATGCATGTAAAAGTTGTCATGTTGGTTTTGTTTATGAACGACTAAAGTTATGTGGAGAACGTGA

Function

NR:

description
glutamate receptor ionotropic, kainate 1

GO: NA

KEGG:

id description
K05201 GRIK1; glutamate receptor, ionotropic kainate 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965396.1 True 4642 mRNA 0.46 16 44111550 44232823

Neighbor

gene id symbol gene type direction distance location
LOC110507242 NA coding upstream 9659 44100049 ~ 44101891 (+)
cldn8 LOC106581534 coding upstream 13514 44095444 ~ 44098036 (+)
zgc:110333 LOC106581535 coding upstream 21335 44088591 ~ 44090215 (+)
LOC110508084 LOC105012849 coding upstream 41965 43873126 ~ 44069585 (+)
LOC118944688 NA coding upstream 212991 43896547 ~ 43898559 (+)
cadm2b LOC106581539 coding downstream 635164 44867987 ~ 45361689 (+)
usp16 usp16 coding downstream 1211082 45443905 ~ 45479066 (+)
LOC110508103 LOC106581548 coding downstream 1247505 45480328 ~ 45487737 (+)
mtus2b LOC106593344 coding downstream 1260400 45493223 ~ 45664305 (+)
foxo1a LOC106581554 coding downstream 1470342 45703165 ~ 45791795 (+)
G2085283 NA non-coding upstream 48405 44061807 ~ 44063145 (+)
G2085282 NA non-coding upstream 53530 44056743 ~ 44058020 (+)
G2085280 NA non-coding upstream 59654 44051095 ~ 44051896 (+)
G2085278 NA non-coding upstream 69209 44041226 ~ 44042341 (+)
G2085275 NA non-coding upstream 69599 44038808 ~ 44041951 (+)
G2085874 NA non-coding downstream 6665 44239488 ~ 44239838 (+)
G2085876 NA non-coding downstream 7060 44239883 ~ 44240150 (+)
G2085877 NA non-coding downstream 7605 44240428 ~ 44240743 (+)
G2085879 NA non-coding downstream 9199 44242022 ~ 44242223 (+)
G2085881 NA non-coding downstream 10191 44243014 ~ 44243216 (+)
G2085122 NA other upstream 377656 43732395 ~ 43733894 (+)
G2085037 NA other upstream 578972 43532270 ~ 43532578 (+)
G2084659 NA other upstream 1047293 43063288 ~ 43064257 (+)
G2084156 NA other upstream 1849913 42260523 ~ 42261637 (+)
G2083851 NA other upstream 1999514 41971259 ~ 42112036 (+)
G2085969 NA other downstream 175230 44408053 ~ 44410050 (+)
G2087149 NA other downstream 1564276 45797099 ~ 45798593 (+)
G2087569 NA other downstream 2090261 46323084 ~ 46323694 (+)

Expression


Co-expression Network