LOC110508103 (LOC106581548)


Basic Information

Item Value
gene id LOC110508103
gene name LOC106581548
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45480328 ~ 45487737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588547.2
TTTGGTCAAATAGTGTAACGCCAAATACTTCCTGGTGCATACGTTTATTGTCACATGACATTTTGTTTCACCAGTGGAATGTAGACCAACCGAAAGCAGCATTTTTATCATAAACTGGTGTAACATTAAATGGAACTATCATCTCGGTGACATGACAGCTTGTCAGGTTGTCACCACCATGTCTCTCAGGGGCGACCGTACCTCCGTGTTCACGTTCCAGTCTACGATTCACAGCTCCCACGTCCTGACGCGTCTCAACGACCAGAGACTGAGTGATGTGTTGTGTGATGTTACACTAGTGGCAGGTGGCAGGGCGTTCAGGGCCCACTGCTCTGTACTGGCCTCCTGTAGTGACTACTTCCACAGCAGGATCCTCAACCACACCAGCCCCAGCCTGGTGCTCACTCTGCCTGATCAGGTAACAGCAGAGGGGTTTGAACCATTGCTACAGTTCTGCTACACCTCCAAGCTGCTCTTCACCAAAGACAATATCATGGCCATCCACAGGTGTGCCGGGCTCCTGGGGTTTCACAACCTGGAGACTAGCTGCTTCGACTTCCTTCTGCCAAAGTTCCTGGAGGGTAGCAACATTACAGCCCAGGAggcaagaagaagaagaggaggctgCTGTCAGGGCAGGTCCCAGATCAGGTCCTCCAACCAGGGAAGATTGCCTAGTGGCAGGTCCCCCGGCCAGAGGAGGTCCCCCAGTGTTGATTCAACACACTGTACAGGCTGTCAGTCTCAAAGCAGGACCCCCAACCAGAGCATTTCACCCAGCCAGGGCTTGTTGCCTAGTGGCATGACCCCCAGCCAGGGCATGTTGCCTAGTGGCATGACCCCCAGCCAGGGCTTGTTGCCTAGTGGCAGTTTAGCCCACAATACAGACACAAACCGAGTCCGAGAGCAGCAGGTTCTACCTCATCCCCAGAACACGGGCCCAAGCCAGacaacaggaagtgatgtcaggAACATAGGAAGTGACGTCAGGGCACAGTGTTCAACTGCCAACCCAAGTGGAACAATGTCACACCAGAGTTTAACAGTGCCTTCGGACGGAAACGTACAAATAAACTTTCTGTCGTCATCCCGATGTCCAAAGAGCCTGGCCTTACTAGTCAACCCGGTCAGCAGTGGTCGGGAGCAGTTCTGTCTACAGACCTGTGGCCCCAACATGTCACCCTTATCCCTCGGGGGACTGCCGTCCTCCAGTGGTCTTGGTGTCTGTCCCATCCTGGCCATGCCGTGTCCTGGTGGTGTTGACCGTAAGCCAGACCCCGACGCCGTTTTCAGTGATAGAGACATCCTTGGGATGGAGGCAGCGGTGTGTCCCATGACGATGGGTGAGGGGAGTCTGAGAGATTGCCCACTCTCCTGTGAACTGCCGTCCCATGAGGATGCGAGCCCATCAGACCTTATTGAGGCAACGGTTGGAGAGATGGCTGATGACCAGCCTGTTGTTGGGAGTCTGATGGCTGAAGAAGCTGGGAGTAACCCAGGTTCCTGTAGCACGTGCCCACTGAGAGGCTCAGGGGTGGTAGAAGAGGCTGAGCTTCAGCTACCTGTATTGGATCTCCTGGCAATACACAAAAGCCCTAACTCAGAAAATAGTGAGGGGGAGAGCCATGGTGGATGCCTTATGCTCCCAAGGCCACAACGATTAGGTCAAGTAGATCAGCTACCTGTGTTAATGCAGAGAGAGGACCCTGGTCTGGATGGCAGCGTGGCTGTTGAGGGTCATCTCCCTGACTCCGCCCTCactgacccctccctctctgacCCCACCCTCTGTGGTCTTACCCCTGATGGTAGGGGGTATGGAGAGCGGAGCATCGTGGAGAGGGAGGTGGCTGAACATCTGGCCAAGGGTTTCTGGCCTGATTTATACCCCTCACAGACTGAATCTCTCCCTAGTCTCCCTAATCTGGACACCATGGAGCACGGAGGTCTGGGGAGAGTTCCTAATCTGGACACCATGGAGCACGGAGGTCTGGGAAAGGCTACAGACTTCCCCTGGCAGCTAGACCTGAACTCAAATCCAGCAGACTGTCCCTTCCTTAGAGACCTGGGGACAGGAGAGGCaggggggatggaggggatggaagaGGAGAGGACTCAGACGGAGACCTGGACACAGacggagacacggagagagaggccAACAACAGGAGAGCACAAGAGGTTCGTCTGCCCTTCCCGGTGGTTCAGATCTCGTCAGTGAGTCGTAGTGCCTTCCAACAGCTCCTACGATGCCAGCAGCTGACCCACGAACAGCTGGAATTCGTCCACGACGTTCGACGACGCAGCAAGAACCGCGTGGCCGCCCAGCGCTGTCGCAAGAGGAAGCTAGAAGGCATCAGTAAACTACAGACTGAGATCGGCACACTGagaggagagaagaagaggttgCTGGAGGAGCAGGCCCATCTGCAGAGGAACATGGAGGAGATGTTACAGAGTCTGACAGGGCTGTGTCACAGCGTCTGCAACGAGGCAGGGGTCTGTCATGAGCAGGACCAGCTACAGCTCCTAGCCAAGCTCCAGTCTCCTGACGTCT
>XM_021588546.2
GGTCAAATAGTGTAACGCCAAATACTTCCTGGTGCATACGTTTATTGTCACATGACATTTTGTTTCACCAGTGGAATGTAGACCAACCGAAAGCAGCATTTTTATCATAAACTGGTGTAACATTAAATGGAACTATCATCTCGGTGACATGACAGCAGCTTGTCAGGTTGTCACCACCATGTCTCTCAGGGGCGACCGTACCTCCGTGTTCACGTTCCAGTCTACGATTCACAGCTCCCACGTCCTGACGCGTCTCAACGACCAGAGACTGAGTGATGTGTTGTGTGATGTTACACTAGTGGCAGGTGGCAGGGCGTTCAGGGCCCACTGCTCTGTACTGGCCTCCTGTAGTGACTACTTCCACAGCAGGATCCTCAACCACACCAGCCCCAGCCTGGTGCTCACTCTGCCTGATCAGGTAACAGCAGAGGGGTTTGAACCATTGCTACAGTTCTGCTACACCTCCAAGCTGCTCTTCACCAAAGACAATATCATGGCCATCCACAGGTGTGCCGGGCTCCTGGGGTTTCACAACCTGGAGACTAGCTGCTTCGACTTCCTTCTGCCAAAGTTCCTGGAGGGTAGCAACATTACAGCCCAGGAggcaagaagaagaagaggaggctgCTGTCAGGGCAGGTCCCAGATCAGGTCCTCCAACCAGGGAAGATTGCCTAGTGGCAGGTCCCCCGGCCAGAGGAGGTCCCCCAGTGTTGATTCAACACACTGTACAGGCTGTCAGTCTCAAAGCAGGACCCCCAACCAGAGCATTTCACCCAGCCAGGGCTTGTTGCCTAGTGGCATGACCCCCAGCCAGGGCATGTTGCCTAGTGGCATGACCCCCAGCCAGGGCTTGTTGCCTAGTGGCAGTTTAGCCCACAATACAGACACAAACCGAGTCCGAGAGCAGCAGGTTCTACCTCATCCCCAGAACACGGGCCCAAGCCAGacaacaggaagtgatgtcaggAACATAGGAAGTGACGTCAGGGCACAGTGTTCAACTGCCAACCCAAGTGGAACAATGTCACACCAGAGTTTAACAGTGCCTTCGGACGGAAACGTACAAATAAACTTTCTGTCGTCATCCCGATGTCCAAAGAGCCTGGCCTTACTAGTCAACCCGGTCAGCAGTGGTCGGGAGCAGTTCTGTCTACAGACCTGTGGCCCCAACATGTCACCCTTATCCCTCGGGGGACTGCCGTCCTCCAGTGGTCTTGGTGTCTGTCCCATCCTGGCCATGCCGTGTCCTGGTGGTGTTGACCGTAAGCCAGACCCCGACGCCGTTTTCAGTGATAGAGACATCCTTGGGATGGAGGCAGCGGTGTGTCCCATGACGATGGGTGAGGGGAGTCTGAGAGATTGCCCACTCTCCTGTGAACTGCCGTCCCATGAGGATGCGAGCCCATCAGACCTTATTGAGGCAACGGTTGGAGAGATGGCTGATGACCAGCCTGTTGTTGGGAGTCTGATGGCTGAAGAAGCTGGGAGTAACCCAGGTTCCTGTAGCACGTGCCCACTGAGAGGCTCAGGGGTGGTAGAAGAGGCTGAGCTTCAGCTACCTGTATTGGATCTCCTGGCAATACACAAAAGCCCTAACTCAGAAAATAGTGAGGGGGAGAGCCATGGTGGATGCCTTATGCTCCCAAGGCCACAACGATTAGGTCAAGTAGATCAGCTACCTGTGTTAATGCAGAGAGAGGACCCTGGTCTGGATGGCAGCGTGGCTGTTGAGGGTCATCTCCCTGACTCCGCCCTCactgacccctccctctctgacCCCACCCTCTGTGGTCTTACCCCTGATGGTAGGGGGTATGGAGAGCGGAGCATCGTGGAGAGGGAGGTGGCTGAACATCTGGCCAAGGGTTTCTGGCCTGATTTATACCCCTCACAGACTGAATCTCTCCCTAGTCTCCCTAATCTGGACACCATGGAGCACGGAGGTCTGGGGAGAGTTCCTAATCTGGACACCATGGAGCACGGAGGTCTGGGAAAGGCTACAGACTTCCCCTGGCAGCTAGACCTGAACTCAAATCCAGCAGACTGTCCCTTCCTTAGAGACCTGGGGACAGGAGAGGCaggggggatggaggggatggaagaGGAGAGGACTCAGACGGAGACCTGGACACAGacggagacacggagagagaggccAACAACAGGAGAGCACAAGAGGTTCGTCTGCCCTTCCCGGTGGTTCAGATCTCGTCAGTGAGTCGTAGTGCCTTCCAACAGCTCCTACGATGCCAGCAGCTGACCCACGAACAGCTGGAATTCGTCCACGACGTTCGACGACGCAGCAAGAACCGCGTGGCCGCCCAGCGCTGTCGCAAGAGGAAGCTAGAAGGCATCAGTAAACTACAGACTGAGATCGGCACACTGagaggagagaagaagaggttgCTGGAGGAGCAGGCCCATCTGCAGAGGAACATGGAGGAGATGTTACAGAGTCTGACAGGGCTGTGTCACAGCGTCTGCAACGAGGCAGGGGTCTGTCATGAGCAGGACCAGCTACAGCTCCTAGCCAAGCTCCAGTCTCCTGACGTCT
>TU2386442
GGACAGTCTGGTGTGATGGGTGGGGTGGAGGAGACCGGGGAGGCCCAGACCCCCGGTGGGAACCACAGCCTGTCCCAGTCTGAGATGAGTCCCTACATGTCATCTCTGAACTCAGGAGAGGACTCAGACGGAGACCTGGACACAGacggagacacggagagagaggccAACAACAGGAGAGCACAAGAGGTTCGTCTGCCCTTCCCGGTGGTTCAGATCTCGTCAGTGAGTCGTAGTGCCTTCCAACAGCTCCTACGATGCCAGCAGCTGACCCACGAACAGCTGGAATTCGTCCACGACGTTCGACGACGCAGCAAGAACCGCGTGGCCGCCCAGCGCTGTCGCAAGAGGAAGCTAGAAGGCATCAGTAAACTACAGACTGAGATCGGCACACTGagaggagagaagaagaggttgCTGGAGGAGCAGGCCCATCTGCAGAGGAACATGGAGGAGATGTTACAGAGTCTGACAGGGCTGTGTCACAGCGTCTGCAACGAGGCAGGGGTCTGTCATGAGCAGGACCAGCTACAGCTCCTAGCCAAGCTCCAGTCTCCTGACGTCTCTGTCTCAGCCCTCCTCAACACTCTGGC

Function

NR:

description
transcription regulator protein BACH1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588547.2 False 2557 mRNA 0.55 6 45480328 45487709
XM_021588546.2 False 2557 mRNA 0.55 6 45480331 45487709
TU2386442 True 593 TUCP 0.59 3 45486637 45487737

Neighbor

gene id symbol gene type direction distance location
usp16 usp16 coding upstream 1262 45443905 ~ 45479066 (+)
cadm2b LOC106581539 coding upstream 119673 44867987 ~ 45361689 (+)
LOC110508097 LOC105006673 coding upstream 1247505 44111550 ~ 44232823 (+)
LOC110507242 NA coding upstream 1378437 44100049 ~ 44101891 (+)
cldn8 LOC106581534 coding upstream 1382292 44095444 ~ 44098036 (+)
mtus2b LOC106593344 coding downstream 5514 45493223 ~ 45664305 (+)
foxo1a LOC106581554 coding downstream 215456 45703165 ~ 45791795 (+)
LOC118944695 NA coding downstream 289310 45776962 ~ 45777979 (+)
LOC110508109 LOC105029023 coding downstream 715888 46203597 ~ 46349567 (+)
LOC118944693 NA coding downstream 864286 46351995 ~ 46354652 (+)
G2086658 NA non-coding upstream 4485 45473868 ~ 45475843 (+)
G2086644 NA non-coding upstream 37242 45442866 ~ 45443086 (+)
G2086643 NA non-coding upstream 39116 45440762 ~ 45441212 (+)
G2086634 NA non-coding upstream 50005 45430049 ~ 45430323 (+)
G2086630 NA non-coding upstream 57797 45421933 ~ 45422531 (+)
G2086668 NA non-coding downstream 7886 45495595 ~ 45497342 (+)
G2086678 NA non-coding downstream 26522 45514231 ~ 45514541 (+)
G2086688 NA non-coding downstream 45052 45532761 ~ 45532987 (+)
G2086691 NA non-coding downstream 50201 45537910 ~ 45538203 (+)
G2085969 NA other upstream 1070278 44408053 ~ 44410050 (+)
G2085314 NA other upstream 1361089 44118223 ~ 44119239 (+)
G2085122 NA other upstream 1746434 43732395 ~ 43733894 (+)
G2085037 NA other upstream 1947750 43532270 ~ 43532578 (+)
G2084659 NA other upstream 2416071 43063288 ~ 43064257 (+)
G2087149 NA other downstream 309390 45797099 ~ 45798593 (+)
G2087569 NA other downstream 835375 46323084 ~ 46323694 (+)
G2087592 LOC106592078 other downstream 1006213 46493922 ~ 46499497 (+)
G2087865 NA other downstream 1539410 47027119 ~ 47028563 (+)

Expression


Co-expression Network