Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118944695 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048591.1 |
| NCBI id | CM023245.2 |
| chromosome length | 51556237 |
| location | 45776962 ~ 45777979 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005039993.1 | False | 468 | mRNA | 0.44 | 3 | 45777019 | 45777979 |
| TU2387105 | True | 297 | lncRNA | 0.43 | 2 | 45776962 | 45777454 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| mtus2b | LOC106593344 | coding | upstream | 112714 | 45493223 ~ 45664305 (+) |
| LOC110508103 | LOC106581548 | coding | upstream | 289310 | 45480328 ~ 45487737 (+) |
| usp16 | usp16 | coding | upstream | 297953 | 45443905 ~ 45479066 (+) |
| cadm2b | LOC106581539 | coding | upstream | 416364 | 44867987 ~ 45361689 (+) |
| LOC110508097 | LOC105006673 | coding | upstream | 1544196 | 44111550 ~ 44232823 (+) |
| LOC110508109 | LOC105029023 | coding | downstream | 425618 | 46203597 ~ 46349567 (+) |
| LOC118944693 | NA | coding | downstream | 574016 | 46351995 ~ 46354652 (+) |
| nek3 | nek3 | coding | downstream | 597340 | 46375319 ~ 46411167 (+) |
| cysltr2b | LOC106581558 | coding | downstream | 795242 | 46573221 ~ 46576187 (+) |
| fndc3a | LOC106581557 | coding | downstream | 801641 | 46579620 ~ 46761993 (+) |
| G2087154 | NA | non-coding | upstream | 55751 | 45720880 ~ 45721268 (+) |
| G2087145 | LOC106581545 | non-coding | upstream | 77291 | 45688027 ~ 45699728 (+) |
| G2087144 | NA | non-coding | upstream | 89227 | 45687447 ~ 45687792 (+) |
| G2087141 | NA | non-coding | upstream | 93017 | 45683784 ~ 45684002 (+) |
| G2087139 | NA | non-coding | upstream | 97592 | 45679225 ~ 45679427 (+) |
| G2087147 | NA | non-coding | downstream | 21139 | 45799118 ~ 45801587 (+) |
| G2087333 | NA | non-coding | downstream | 103349 | 45881328 ~ 45881554 (+) |
| G2087346 | NA | non-coding | downstream | 120567 | 45898546 ~ 45898783 (+) |
| G2087350 | NA | non-coding | downstream | 133582 | 45911561 ~ 45911816 (+) |
| G2087389 | NA | non-coding | downstream | 183578 | 45961557 ~ 45961796 (+) |
| G2085969 | NA | other | upstream | 1366969 | 44408053 ~ 44410050 (+) |
| G2085314 | NA | other | upstream | 1657780 | 44118223 ~ 44119239 (+) |
| G2085122 | NA | other | upstream | 2043125 | 43732395 ~ 43733894 (+) |
| G2087149 | NA | other | downstream | 19120 | 45797099 ~ 45798593 (+) |
| G2087569 | NA | other | downstream | 545105 | 46323084 ~ 46323694 (+) |
| G2087592 | LOC106592078 | other | downstream | 715943 | 46493922 ~ 46499497 (+) |
| G2087865 | NA | other | downstream | 1249140 | 47027119 ~ 47028563 (+) |
| prcp | prcp | other | downstream | 1259063 | 47020501 ~ 47056921 (+) |
