LOC110508118 (cssa20h3orf52)


Basic Information

Item Value
gene id LOC110508118
gene name cssa20h3orf52
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46906850 ~ 46930260 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965302.1
AATATTAGGGCACATTCCTACAGGACCGAAGTAACACATTCTAGCCTACTCAACAAGCGTCAAAAGTCCTGGAAAATGCCTATGGAATGAAATCTAAACGTTGTATGGGAACAGACATTATTGACAGGGAAAGCTGCTTCCGTTGGTCTTCTATTTGACACATTTGGGAACTCTCTTTTCTTTTATTCTTTCTCGCTCTGAGTAAAGACAACGCCTTCTTCCGTCTCCATCGAAACTTGACAAGGAAAAGTCACCTGGGACAACCCAGCTGGGCAGGGCAGAAAGGAATAGTCTAATGGAAGTCGTATCACAACGCTGATTAGACTACAACAATATTTTCATAACTTATCATGTATGTCAGTATTGATTAAATCTTCGTTATTGAACATAGCCTACTGTCTTGAGACTGATAAAGGGTAAAATCGTCTCATAGTTCCGGGTTTGTGGAAATTATTCCCGAGTATTGTAATAACTTGAGAAACATGGACAGCATCGAGTTACAGCCGGTTCAAAGCCTTGACAACAACAATCACCATGCTGAAAATACCTCTAAGCAACAGATGACTTCAGGTAATAGACCTATGCTGACCACCAATGACGCAGCAGAGGAAGGAAACCCCCTGCTTTCTCCTGAACAGGTTCCTGTCGATAATGGCGGGCATCATTGGGTTGATGGACAAGAGGTCAACCAAGAGTCGATCTCTCTCAACGTACAGAACAGCATCGCCAACAAAGAAATGACCTGCATGGTGCACAGAAGACGGTGGATGatcctcatcttcctcatcttcctcatcctGCTGGTGATTGGAGTCTCCTTCGCTGTGTGTTTAGGAATCCACGATGACATAGACGAGAAGTACGATCCAGCGCTGTTTGAGCTGCCGCGATGTTTCAACGGAAGCTTCAGACTGACCAATCAGATATTCATACCAGATCTGCTATCCCCAGCGTCCAATCAGAGTAAGACCCTGTCCAGCCAACTGCAAGAGAAGtTGTCTGACCTCTACAGTTCATCTCCGGCCCTGGGTCGCTACTTCTCCAGTGTtgaaatctctgacttcagAAACGGCTCTGTGCAAGCTGACTACCGGCTGAGGTTCCTGATGCCCCGGAATAATACTGAGTTGGAGCAGTTCACTCTGAGCAGAGAGATGGTGTATAATGTCTTCAGACAGTCTCTCTATGACCAAGACCCTGAGCTCAAccacccactgtatatacacccgGCTTCACTGGACATGCAGgTTGGCTCAGTGACTAGTGAGAGCAGAAGTGGCGTGCTGTATTGGTGACGACTACGCAATACTCTGGGGAGTTTCCCAGCAAAGAGATTTGAGCAGATCCAAGAGACCCATCTGATTGAGTGGAATATCTGACGGCTACGTAGAACCCATGGAccaacccagacacacacacaatgaaaccCTGTGAAACTGGATCACTACTGCTGTGTCAGTGGCATGTACAACCTGACAGACTGTATGACAAATAGACATTGATGATACTTTTCTGCACATTCCAATCATTCCATCTATCTCAAGTAGCCAAGAGAATGGAAAGGCCTAAGTGTACTTTTGGAATGAGGATAATGGGGTGTTGACATTAAGTGTTTGTCTGACGGTGAATTATTTTGTTTGCATGTTAAGTGTCAAAGTGGATTAACAATGTCTGTGGCCAAGCCAGATGTTTTTATCCAAGATGTTTTTATCCAAGATGTTTTTATCCAAGATCTTTTTTATCCAAGATGTTTTTATCCAAGATGTTTTTATCCAAGATCTTTTTTATCCAAGATGTTTTTATCCAAGATGTTTTTATCCAAGATGTTTTTATCCAAGATCTTTTTTATCCAAGATCTTTTTTTTAATCCAAGATCTTTTTATCGGTTGTAATATGACTTCCTGATACCTACTCTATAGTCTATATATCATGTCTGAGAGAACTAACTATTCCAATTTGAGGCATTGCTTCAATCTCTATATTCTTtcacattttacattttacatgAATTGATTGGAAACTGTATTTTGTAATTTtgtgaaataaatgttttgttttttattgtA
>XM_036965303.1
GGAACATCTGACTTTGATGAGAAACAGAAAGTGAAAATGAATGTTTTCAGTGtgcatgacagacagacagacagacagagacggacagaccACTCTGATGAAGGTTCCTGTCGATAATGGCGGGCATCATTGGGTTGATGGACAAGAGGTCAACCAAGAGTCGATCTCTCTCAACGTACAGAACAGCATCGCCAACAAAGAAATGACCTGCATGGTGCACAGAAGACGGTGGATGatcctcatcttcctcatcttcctcatcctGCTGGTGATTGGAGTCTCCTTCGCTGTGTGTTTAGGAATCCACGATGACATAGACGAGAAGTACGATCCAGCGCTGTTTGAGCTGCCGCGATGTTTCAACGGAAGCTTCAGACTGACCAATCAGATATTCATACCAGATCTGCTATCCCCAGCGTCCAATCAGAGTAAGACCCTGTCCAGCCAACTGCAAGAGAAGtTGTCTGACCTCTACAGTTCATCTCCGGCCCTGGGTCGCTACTTCTCCAGTGTtgaaatctctgacttcagAAACGGCTCTGTGCAAGCTGACTACCGGCTGAGGTTCCTGATGCCCCGGAATAATACTGAGTTGGAGCAGTTCACTCTGAGCAGAGAGATGGTGTATAATGTCTTCAGACAGTCTCTCTATGACCAAGACCCTGAGCTCAAccacccactgtatatacacccgGCTTCACTGGACATGCAGgTTGGCTCAGTGACTAGTGAGAGCAGAAGTGGCGTGCTGTATTGGTGACGACTACGCAATACTCTGGGGAGTTTCCCAGCAAAGAGATTTGAGCAGATCCAAGAGACCCATCTGATTGAGTGGAATATCTGACGGCTACGTAGAACCCATGGAccaacccagacacacacacaatgaaaccCTGTGAAACTGGATCACTACTGCTGTGTCAGTGGCATGTACAACCTGACAGACTGTATGACAAATAGACATTGATGATACTTTTCTGCACATTCCAATCATTCCATCTATCTCAAGTAGCCAAGAGAATGGAAAGGCCTAAGTGTACTTTTGGAATGAGGATAATGGGGTGTTGACATTAAGTGTTTGTCTGACGGTGAATTATTTTGTTTGCATGTTAAGTGTCAAAGTGGATTAACAATGTCTGTGGCCAAGCCAGATGTTTTTATCCAAGATGTTTTTATCCAAGATGTTTTTATCCAAGATCTTTTTTATCCAAGATGTTTTTATCCAAGATGTTTTTATCCAAGATCTTTTTTATCCAAGATGTTTTTATCCAAGATGTTTTTATCCAAGATGTTTTTATCCAAGATCTTTTTTATCCAAGATCTTTTTTTTAATCCAAGATCTTTTTATCGGTTGTAATATGACTTCCTGATACCTACTCTATAGTCTATATATCATGTCTGAGAGAACTAACTATTCCAATTTGAGGCATTGCTTCAATCTCTATATTCTTtcacattttacattttacatgAATTGATTGGAAACTGTATTTTGTAATTTtgtgaaataaatgttttgttttttattgtA

Function

NR:

description
TPA-induced transmembrane protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965302.1 False 2066 mRNA 0.42 9 46906850 46930260
XM_036965303.1 True 1531 mRNA 0.42 8 46914788 46930260

Neighbor

gene id symbol gene type direction distance location
zgc:153184 LOC106581572 coding upstream 8928 46821927 ~ 46897922 (+)
mlnr LOC106581570 coding upstream 123819 46774412 ~ 46783031 (+)
fndc3a LOC106581557 coding upstream 148533 46579620 ~ 46761993 (+)
LOC118944696 NA coding upstream 161825 46742996 ~ 46745025 (+)
cysltr2b LOC106581558 coding upstream 330663 46573221 ~ 46576187 (+)
guca1c LOC106581568 coding downstream 16610 46946870 ~ 46959779 (+)
LOC110508116 thrsp coding downstream 41027 46971287 ~ 46972031 (+)
rab30 rab30 coding downstream 47843 46978103 ~ 47003404 (+)
prcp prcp coding downstream 90241 47020501 ~ 47056921 (+)
LOC110513068 fam181b coding downstream 144270 47074530 ~ 47076721 (+)
G2087829 NA non-coding upstream 3592 46900603 ~ 46903258 (+)
G2087812 NA non-coding upstream 58282 46842055 ~ 46848568 (+)
G2087799 NA non-coding upstream 86618 46817093 ~ 46820232 (+)
G2087756 NA non-coding upstream 196970 46708908 ~ 46709880 (+)
G2087727 NA non-coding downstream 6553 46936813 ~ 46937184 (+)
G2087838 NA non-coding downstream 12722 46942982 ~ 46943760 (+)
G2087731 NA non-coding downstream 105330 47035590 ~ 47035929 (+)
G2087869 NA non-coding downstream 109852 47040112 ~ 47040808 (+)
G2087592 LOC106592078 other upstream 409963 46493922 ~ 46499497 (+)
G2087569 NA other upstream 583156 46323084 ~ 46323694 (+)
G2087149 NA other upstream 1108257 45797099 ~ 45798593 (+)
mtus2b LOC106593344 other upstream 1376911 45493223 ~ 45664305 (+)
LOC110508103 LOC106581548 other upstream 1419113 45480328 ~ 45487737 (+)
G2087865 NA other downstream 96859 47027119 ~ 47028563 (+)
G2088729 NA other downstream 595180 47525440 ~ 47528548 (+)
G2088732 NA other downstream 602162 47532422 ~ 47537945 (+)
G2088870 NA other downstream 923846 47854106 ~ 47864829 (+)

Expression


Co-expression Network