trpc6b (LOC106581586)


Basic Information

Item Value
gene id trpc6b
gene name LOC106581586
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49089883 ~ 49186113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965696.1
ATCAACCGTCTACGGTAGACTGTTCTGTGGTCAGGGTACAGACGCGCTCATTCTGCGCTCAGCGTCAGTCCATTCCAAGAGTGGATTTAGGAGGTTTGTAGCGTCTTTGTCTGTGCGCTTCTGTTGATGATCAGCTGGGTTGAGATTGACAAGAAATGACTCACAGAAGACTGTATTTCAATGAAAGTGATTCAACAAAACGATGTTCTACCGAAGGAGATTCTGATAGAGATCATCCACCGTTGAAGACAGACTCATCTGCTAACAGTAGCGCAAACTGCCACGGACACGACAAGAGATGGATCAATGAGGACCGTCACACCATGCTACGACAGACCCTGGCCAAGACACGGAGACTGGGCATGCGGGGGCCGGCCTACATGTTCAGCGCCCGCTCAGCCAGCCTATCCCTGACCGAGGAGCGCTTCCTGGACGCGGCGGAGTACGGCAACATCCCCGGGGTCCGCAAAATGCTGGAGGAACTTCCTGAACTCAACGTCAACTGTGTGGACTACATGGGCCAGAATGCATTACAGCTGGCGGTGGCCAACGAGCATCTAGAGGTTACGGAGCTGTTACTGAAGAAGGATAATCTGGCCAGGATAGGGGATGCTCTACTGTTGGCAATCAGTAAAGGATACATTAGGATAGTGGAGGCAATATTGAGTCACAGGGCCTTCGCAGACACACGGAGGCTCGTCAACAGTCCTGGCCGAGCAGAGACACAAGACGACTTCTTCTCCTATGACGAGGATGGTACACGGTTTTCTCATGACATCACCCCCATCATCCTGGCCTCTCACTGCCATGAGTACGAGGTAGTACACATCCTCCTGAGGAAGGATGCCCGTATCGAGCGACCACACGACTACCTCTGTAAGTGTGGCACCTGCAGCTACCACCAGAAGCATGACTCGTTCAGCCACTCTCGGTCCCGTATCAACGCCTATAAAGGGCTGGCCAGCCCagcctacatgtctctctctagcAAAGACCCTGTGATGGCTGCTCTGGAGCTGAGCAACGAGCTGGCTGTCCTGGCTAACATCGAGAAGGAGTTTAAGAAAGATTACAAGGAACTGTCCGTGCAATGTGAAGACTTTGTGGTCGGACTGCTGGACCTGTGCCGTAACACGGAGGAGGTGGAGGCCATCTTGAATGGGGACATTGATGCCAGTGAAAACAATGAGCCACATGAAAGACCAAGTTTTATAAGACTAAAGCTCGCAATAAAATATGAACTGAAGAAGTTCATAGCCCATCCAAACTGTCAGCAGCAGCTCATGTCTATCTGGTACGAGAACCTGTCTGGACTGAGACAGCAGACCAACGTTGTCAAGTTTCTGGTAGTTCTGGGTGTAGCTGTTGGACTACCTGTCCTGGCTCTGCTCTACTGGGTGGCACCGACTTGCAAGCTGGGGAAGATAATGCGTGGTCCCTTCCTGAAGTTCGTGGCCCATGCAGCTTCCTTCACCATCTTCCTGGGCCTGCTGGTGATGAATGCAGCTGATCGCTTCCAGGGTACCAAACTGCTCCCTAACATGACCGTACAGGACCACCCCTCTCAGCTGTTCAGGATGACGACCACCCCCTTCACCTGGATGGAGATACTCATCATATCCTGGGTCATAGgAATGGTCTGGGCTGAGTGTAAGGAGATTTGGTCCCAGGGGGCTCGGGAATATCTTTCGGAGACATGGAATCTTCTAGACTTTGGAATGCTGAGCCTTTTCGTGACATCCTTCATCACTAGATTTATGGCGTTCTGGCATGCGTATTCAGCACAGAGCTACGTCAACAAGCACTATACCGACCTGTCCAACATTACCCTGGTCCCAGAGATAGAGTACTACAGACTGGcccgtAATAACTGGGTTCCCTCGGACCCCCAGATCATCTCAGAGGGTCTGTATTCCATTGCTGTGGTACTGAGCTTCTCTCGCATCGCCTACATCCTCCCAGCCAATGAGAGTTTCGGGCCCCTGCAGATATCTCTGGGACGCACGGTGAAAGATATCTTCAAGTTCATGGTGATCTTCATCATGGTTTTTGTGGCCTTCATGTTTGGAATGTTCAATCTCTACTCATACTACCTGGGAGCCAAGCAGAACGACGCCTTCACCACGATTGAGGAAAGTTTCAAGACGTTATTCTGGGCCATATTTGGCTTGTCCGAAGTCAAGTCAGTGAAGATCAACAATGGCCATAAATTTATCGAGAATATCGGCTATATCCTTTATGGGGTTTATAACGTCACCATGGTGATCGTCCTGCTCAACATGCTCATTGCCATGATCAATAACTCCTTCCAGGAAATAGAGgatgACGCTGATGTAGAGTGGAAATTTGCCCGGGCTAAGCTATGGTTCTCCTACTTTGAGGAAGGTGGGACATTACCTGTCCCCTTTAACCTGGTTCCTAGTCCCAAGTCAATCATTGCCCTGGTCCTGGGGCTAAGAGACCTCATGCTGAAGGCTCTCAACAGACACAAGAGCTGTCACAATGAGGATACAGAGCTCAATAAGGTGAACCTCACAATCATGcgcgctctctcacacacacacacacaGTTATCACCACAAGGCATTGCTTTACTTTACTCATTTCTATACAACTATCATGTGTTCCTCTTTTTTTTCCCTATTTCACAGAAGATAATGAAACGCCTCATCAAGAGATATGTGATGAAAGCACAGATCAATAAAGACAGTGAGGAAGTGAATGAAGGAGAGCTGAAGGAGATTAAACATGACATCTCTAGTTTACGCTACGAACTCCTGGAGCAGAAGAACCACAATACGGAGGAGTTAGCTGAGCTGATCCGGAGACTGGGGGAGAAGATACCTGCCGAGCAGCAGAGGCATCAGGGTCAGACATAGGTATATGTATTCTACATCGTCTAGGATCAATGATGAGTGAGCTGATCAGgaggagactgggagagaggacaCCTGCCGAACACCAACCACATACGCTGAACATATAAAACATCATACCTatttccatgacgtagactgagtccaggtgaaagttatcatcccttattgatgtcacttgttaaatccacttcc
>TU2390778
AGTTCATGGTGATCTTCATCATGGTTTTTGTGGCCTTCATGTTTGGAATGTTCAATCTCTACTCATACTACCTGGGAGCCAAGCAGAACGACGCCTTCACCACGTGAGTTATGTAATTATAGAGGAAATGGATACACACAGTGCCGTCGGAAAGtgttcagagcccttgacttttaccgcattttattacgttacagccttattctaaaatggattaaatagttttttcccctcatcaatctacacacaatacctcataatgacatcacaataccccttaatgacatcacaatacctcataatgacatcacaat

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965696.1 False 3071 mRNA 0.49 11 49089883 49186113
TU2390778 True 314 lncRNA 0.39 1 49142959 49143272

Neighbor

gene id symbol gene type direction distance location
zmp:0000001236 LOC106581583 coding upstream 315202 48633372 ~ 48774681 (+)
gab2 gab2 coding upstream 465435 48460449 ~ 48624448 (+)
nars2 nars2 coding upstream 631444 48401253 ~ 48458439 (+)
tenm4 tenm4 coding upstream 770798 47640597 ~ 48319085 (+)
LOC118944690 NA coding upstream 1606849 47482390 ~ 47483034 (+)
pgr LOC100846969 coding downstream 15335 49201448 ~ 49266635 (+)
LOC118944717 NA coding downstream 136900 49323013 ~ 49323866 (+)
LOC110508133 fbxo40 coding downstream 1279770 50465883 ~ 50476608 (+)
LOC110507254 nectin1 coding downstream 1479606 50665719 ~ 50850459 (+)
LOC110508131 LOC106613338 coding downstream 2287407 51473520 ~ 51510450 (+)
G2089983 NA non-coding upstream 11226 49078453 ~ 49078657 (+)
G2089937 NA non-coding upstream 25425 49064090 ~ 49064458 (+)
G2089931 NA non-coding upstream 37514 49052146 ~ 49052369 (+)
G2089930 NA non-coding upstream 37836 49051765 ~ 49052047 (+)
G2089927 NA non-coding upstream 44508 49045149 ~ 49045375 (+)
G2090065 NA non-coding downstream 39352 49225465 ~ 49225698 (+)
G2090066 NA non-coding downstream 40123 49226236 ~ 49226471 (+)
G2090077 NA non-coding downstream 62794 49248907 ~ 49249491 (+)
G2090079 NA non-coding downstream 64489 49250602 ~ 49250839 (+)
G2090085 NA non-coding downstream 75947 49262060 ~ 49262439 (+)
G2089935 NA other upstream 30988 49058005 ~ 49058895 (+)
G2089906 NA other upstream 162591 48926975 ~ 48927292 (+)
G2089124 NA other upstream 634397 48432478 ~ 48455486 (+)
G2089020 NA other upstream 898521 48188209 ~ 48191362 (+)
G2088870 NA other upstream 1225054 47854106 ~ 47864829 (+)
G2090091 LOC106581584 other downstream 126630 49312743 ~ 49316226 (+)
G2090103 NA other downstream 147334 49333447 ~ 49334183 (+)
G2090508 NA other downstream 599014 49782101 ~ 49788805 (+)
G2090638 NA other downstream 895950 50082063 ~ 50087691 (+)
G2090031 NA non-coding upstream 1905 49140770 ~ 49141054 (+)
G2090025 NA non-coding upstream 19980 49122731 ~ 49122979 (+)
G2090010 NA non-coding upstream 33289 49109427 ~ 49109670 (+)
G2090001 NA non-coding upstream 43081 49099304 ~ 49099878 (+)
G2090034 NA non-coding downstream 4562 49147834 ~ 49153873 (+)
G2090036 NA non-coding downstream 19692 49162964 ~ 49163165 (+)
G2090037 NA non-coding downstream 24169 49167441 ~ 49169334 (+)

Expression


Co-expression Network