LOC110507254 (nectin1)


Basic Information

Item Value
gene id LOC110507254
gene name nectin1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 50665719 ~ 50850459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964625.1
AACGTCACCGATTCGGGTTTGACTCCGGGCTTGTCAGCTAGGTTACATTACGCCAGGTCAGGTTGTGGCGTCTATGTGGGGGAAATCCGCATAGCGGGATTGCATGCTGTTTTATGAAAGAATACCTAGTATTTTTGTCGAATAAACTACCGGATACAAATCTGCTCTGAGTCCACGGAGGGAGTAAAAACATATACAAATCCTGATTCCATTGCCGGCAGAAAGAGGGAACTTCGGCTTTTGTTTTGTTCTAAAAAAACAAGTGAAGAAGACCTTTGCAGATCTGTCTGTTGGATATGATCTGAATTGTAACGAGGCAAATCATTTTGAACTATCCATTGTGTTTCATGGAACTTGCCATTGGGGGCATCGAGCACCTCCCGCCCCTTCGCCTCTATCCCAAAATACTGGAGGCTATAGCAATAGCAGTGACGACCTGCAGCATTGGATGAGACACGGGATCCAAGGTACACTTGACCACAATAGAAACCTGTTTTGGACGATTTCTGCTCCCCCGCATCGTTTACCTAACTCCGTTAGATAGGTACGCATCATCTCGTTTGTTCGGTTGTGCGTAAACAAAGCTCCTTGGATATCTTCGGCAGATCTCAACGCCAATCTACCGTACGGACACCGATTCGTGGTGCGTAGTTCAAAAGCTACTGGTCGTTGGAATAACTACAGTCAGTCAATAATTGATGCTTTCCACGTCGGCTCATTAGCTTGAAACTAGTTCCAAATCGGCATCGGTTCTGAAGGTAACGGCGTATTCCCAACATACCTGGTCCAAACCATTTGGAGTGAATTGATCCAGTCCACTAAGGGGAAGCTATCAGAGAAGTTCCGGAGAGTTGAAGCGCCGTGGCGATGTTGGCGAGTGTTTGGATTGTCCTCCTGGCTGTGAACATAGAAGctgGAGATGGACAGAGTGTCCAGATGGACTCCATTAAGTCAGGCTTCGTGGGCTCCCAGGTGGAGCTGCGTTGTATCTTCGTTAATTCCAACCCTCCAGTCAAGATCTCTCAGGTGACGTGGCAGAAGTTCCTGAACGGCACCAAACAGAACGTGGCCATCGCCAACCCGTCGCTGGGGGTGTCCGTGCTCCCGCCCTTCAAGGAGAGGGTGACGTTCAAGCAGGCTGCGGTCCGCCACCGCACCCCGTCTCTGGAGGATACCACCATCATGTTCTCCAACCTGAGGCTGTCTGATGAGGCCGCATACATCTGCGAGTACACCACCTTCCCTGCTGGGAACCGAGAGAACATGGtcaacctcaccgtgtttgCTCGACCTCAGACCCGAATGACCTTGACCACGCCCACCATCGTGGCCCGCCCCCAGAAGCGGAAGATGACCGTGGCGACCTGCCTCTCGGCTAATGGAAAGCCTCAGAGTGTGATCAAGTGGGACACGAGGCTGAAGGGCGAAGCCACGTTCCAAGAGACGCAGAATGCCAACGGCACGGTGACCGTTAGGAGCAACTATGTGGTCGTGCcgagcagagagacacacaaacagaaacTCACCTGCATCGTAACCTACAACAACGAGAGGATTACAGACAGTGTCGTGCTCAACGTGCAATatgAACCTGAGGTGAAGATCGAGGGCTTCGATGGTAACTGGTACCTGGACCGTCAGGATGTCAGCCTCACCTGCAATGCTGACGCTAACCCTCCTGTTACCGTCTACCAGTGGAAAGTGTTGAATGGATCTCTTCCCAGCACCGTGGAGATTCTTAACAACTCTCTGATCTTCAAGGGCGCGGTGACCTATGAGCTAGCTGGGACGTACGTGTGTGCTGCCACCAATGGGATTGGGACTCGTACTGGTCTGGTCCAGGTTAATGTTACTGAATTCCCTAACAACCCACCACCTGGGGGCCCTGAGATCCCGCAGGAGCAGCACAATGCGGGTGCCGTCATCGGGGGCGCCGTGGGCGGGGTCGTCCTGTTAGCGGCGGCCGCCACCCTGCTCTTTATGTTCCTGCGCCGCCGCCAGCGCACCTTCAAGGGCGACTACAGCACCAAGAAGCAGGTGTTTGGGAACGGCTACAGCAAGGCCGGGGGCCTGCCAGCCCACCCTCCCATCCCCAACAACCTGCAGTACCCAGACGACTCAGATGACGAGAAGAAGCCTGCCCAGATCGCTGTGACCGGAGGGTTCGAGGCAAGCGAGCGTGATTTTGATGGAGATGCGGAGGACTTGAAGAGGCCCTATTTCACGGTGGatgaaggagagagcagagattACGACGAACGGACTCTTGCTTTCCAGTACGACCCCGAGACGGAGATCGCCGACGATATGGTGTCCCAAACCGATGGCTCTGTCATTTCAAAGAAAGAGTGGTATGTGTAGGGGACACAAACAACCAAACCAACCAACCGACCTCCCGTCTCACTCTCCTACCCTtcccctaccaccaccactaccaccccctCACCTCCATTAGTCAACCCCATCCCGCCTTGCATCTCAGACATTCAGTCCAGTGCCCCTCCAAACCCccaaccccatcagaacccagtCAATTAAAAccatgttttaaaaaatgcacTATCAAGTCCTAAGGAGCATGCAACAACATcaaaatgtcaacaacaacaacacatcaaaatgtcaacaacacatcaacaactaCATTGCatcaacatgtcaacaacaac

Function

symbol description
nectin1 Enables cell adhesion molecule binding activity and identical protein binding activity. Predicted to be involved in several processes, including heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; homophilic cell adhesion via plasma membrane adhesion molecules; and positive regulation of viral entry into host cell. Predicted to act upstream of or within several processes, including camera-type eye development; desmosome organization; and enamel mineralization. Located in adherens junction. Implicated in cleft lip; cleft lip-palate-ectodermal dysplasia syndrome; cleft palate; and ectodermal dysplasia.

NR:

description
PREDICTED: nectin-1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06081 NECTIN1, PVRL1, CD111; poliovirus receptor-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964625.1 True 2669 mRNA 0.52 6 50665719 50850459

Neighbor

gene id symbol gene type direction distance location
LOC110508133 fbxo40 coding upstream 189111 50465883 ~ 50476608 (+)
LOC118944717 NA coding upstream 1341853 49323013 ~ 49323866 (+)
pgr LOC100846969 coding upstream 1399084 49201448 ~ 49266635 (+)
trpc6b LOC106581586 coding upstream 1479606 49089883 ~ 49186113 (+)
zmp:0000001236 LOC106581583 coding upstream 1891038 48633372 ~ 48774681 (+)
LOC110508131 LOC106613338 coding downstream 623061 51473520 ~ 51510450 (+)
G2091369 NA non-coding upstream 33156 50632331 ~ 50632563 (+)
G2091363 NA non-coding upstream 36235 50629268 ~ 50629484 (+)
G2091350 NA non-coding upstream 42834 50622618 ~ 50622885 (+)
G2091339 NA non-coding upstream 55690 50609579 ~ 50610029 (+)
G2091326 NA non-coding upstream 65121 50600260 ~ 50600598 (+)
G2091410 NA non-coding downstream 11546 50862005 ~ 50869242 (+)
G2091411 NA non-coding downstream 14138 50864597 ~ 50882759 (+)
G2091488 NA non-coding downstream 19212 50869671 ~ 50870463 (+)
G2091414 NA non-coding downstream 21323 50871782 ~ 50874409 (+)
G2091505 NA non-coding downstream 74067 50924526 ~ 50928521 (+)
G2091093 NA other upstream 312552 50352368 ~ 50353167 (+)
G2090638 NA other upstream 578028 50082063 ~ 50087691 (+)
G2090508 NA other upstream 876914 49782101 ~ 49788805 (+)
G2090103 NA other upstream 1331536 49333447 ~ 49334183 (+)
G2091895 NA other downstream 519305 51369764 ~ 51370763 (+)
G2091960 NA other downstream 619429 51469888 ~ 51470391 (+)

Expression


Co-expression Network