G2084407 (LOC106581489)


Basic Information

Item Value
gene id G2084407
gene name LOC106581489
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 42519645 ~ 42519875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2383508
CTTTGATGGTGTCTCCTATGACCCTCTTGGTGAGGTCAGTGGCAGGGCTCCAGGTGTTGCCCTGGTCGTTACTGGAGATGAAGCAGAGGCGCGTTACATTCTTACCCGTCACCAGCTGGTAGGACTCGGAGGTGTGGCCCAGCACAGCGATGAAGAACAGGAAGAGGGTGCCTGTGAACTCGTCATACAGAGGACACGGGTTCATCGACCGGTGGCCCGCCAACTGAGCCG

Function

NR:

description
LOW QUALITY PROTEIN: sialidase-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2383508 True 231 lncRNA 0.58 1 42519645 42519875

Neighbor

gene id symbol gene type direction distance location
LOC110508059 LOC106581491 coding upstream 4082 42510819 ~ 42515563 (+)
LOC110507283 LOC106581492 coding upstream 16172 42502542 ~ 42503473 (+)
LOC110508060 LOC106581495 coding upstream 26740 42484856 ~ 42492905 (+)
LOC110508061 LOC106581496 coding upstream 27214 42491460 ~ 42492431 (+)
LOC110507235 LOC106581497 coding upstream 103509 42398689 ~ 42416136 (+)
LOC110508057 LOC106581503 coding downstream 54707 42574582 ~ 42629238 (+)
cux1b LOC106581515 coding downstream 146782 42666657 ~ 42816758 (+)
LOC110508074 sh2b2 coding downstream 317370 42837245 ~ 42871486 (+)
LOC110508072 LOC105005600 coding downstream 371084 42890959 ~ 43081678 (+)
LOC110508071 LOC106603399 coding downstream 473819 42993694 ~ 42996810 (+)
G2084401 NA non-coding upstream 17201 42502189 ~ 42502444 (+)
G2084400 NA non-coding upstream 17817 42501615 ~ 42501828 (+)
G2084398 NA non-coding upstream 19199 42499311 ~ 42500446 (+)
G2084397 NA non-coding upstream 21982 42495988 ~ 42497663 (+)
G2084394 NA non-coding upstream 30617 42488803 ~ 42489028 (+)
G2084412 NA non-coding downstream 37234 42557109 ~ 42557308 (+)
G2084455 NA non-coding downstream 72991 42592866 ~ 42594069 (+)
G2084448 NA non-coding downstream 81140 42601015 ~ 42602836 (+)
G2084486 NA non-coding downstream 110693 42630568 ~ 42630781 (+)
G2084492 NA non-coding downstream 118130 42638005 ~ 42638227 (+)
G2084156 NA other upstream 258008 42260523 ~ 42261637 (+)
G2083851 NA other upstream 407609 41971259 ~ 42112036 (+)
LOC110507232 LOC106593204 other upstream 1012472 41485189 ~ 41507173 (+)
G2083239 NA other upstream 1306873 41212204 ~ 41212772 (+)
G2083005 NA other upstream 1534791 40981370 ~ 40984854 (+)
G2084659 NA other downstream 543413 43063288 ~ 43064257 (+)
G2085037 NA other downstream 1012395 43532270 ~ 43532578 (+)
G2085122 NA other downstream 1212520 43732395 ~ 43733894 (+)
G2085314 NA other downstream 1598348 44118223 ~ 44119239 (+)
G2085969 NA other downstream 1888178 44408053 ~ 44410050 (+)

Expression


Co-expression Network