G2085906


Basic Information

Item Value
gene id G2085906
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 44260892 ~ 44264149 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2385409
gatttgGACGTGAATCGAGTTGTTTCACCAACAGGTCATTAAATATGTTGGAGATCATTAATAATTTAGGATTTTGACATGGTCTTGTTCTCTGAATAAACATGTTTTGGTGCAACATCTTTGAGGAAGAAAAAAAAGGATTCCACATTTCTTTTGAGGAAAATCACACAATGAAATTACTAGGCAACACATTTGGCCAAACACATTATAATACAAATCACACAAGATACCATCATAATAAAAGTGGTAAGGTGGAGAAATAGTTAAGCCCCAACAACAACTGTTCCCTAGACGACGGCAGCCCCTTGCACCTCTCAGATGTTGTTCaaatttaacgaggcaagtcggttaagaacaaattcttatttacaatgacggcctaccagggaacagtgggttaactgccttgttcagggagagAACGACTGATTTCGGTTCCTTGCCCaaaggttctaaccactaggctacccagccACCCCTGATTcagagggggttgggttaaatgcggaagacacatttcagttcaatgcattcagttgtgcaactgacttagGTCTCCCCCTTTTACCTATGTTGACTAGTCATCATTTAACATTTCATTAGGGTGATCATGATCGTCTGGCTGACAAAGTAGGCACTTAAAAGTTAACTCCTGAAGTGACTTGGGAAGCATCCCAAATAGTACCctgttccttatatagtgcactacttttaaaccgggcccaaagggctctggtcaacagtagtacagtatacagggaatacgatgccatttgggatgtaagctAACTCCATTCCCTCACTCGTTCAGGATGTGCTCATTTATACATTTAACTTATTTTAATTTACAGTAACTGTACATGCAATATTGTACTATATTAGatgataaactgggtggttcgagccctaaatgctgattggctgacagccatggtatatcagaccctaTACCGTGGGTATAGGTTTTAACTGCTCtagttacgttggtaaccagtttataatagcaataaggcacctcggggaggttgtggtatatggccaatacagGTAtagcacggctaagggctgtatccaggaacTCGCAATGCGTCGTGCACACcaacagtccttagccgtggtatattgggccTTATTACTTAAGTTGGACATACATGTGCATTGGTTTTTTTGATGCAATCAAAAAGTTGACTACGAGGAAGTTGACATAGTTGACTATGAAGAACTCTCATAGTGTGCAATaagaaggagaaggaagagaaggagaagaaggaagagaagaagaaaaaggaagagaagaaggaagagaagaagaaggaagagaagaagaagaaggaaaaggagaagaagaaggaagagaagaaggaggagaagaagaaaaatgaggagaagaaggaggaggagaagaagaaggtgaagaagaagGCTCGTGCAACATTCCGTAAATCATCACTCCTCTACAATGGAAGTTGGAACAATGCCAGCTTACTACCTTAAACACTCACCTCAATTCATACTGTAGTTGTAATCAATTATAATTCATTACATCCTGAATATGATGTTCAATCAAACAAGGAAGTGCAGCTGTATTGACTCAGAGATGGCTCTGCACATATGAATGAAAAAGCATCACTTGTTGTCATCAATAAGTCAATATATTTGTAGATAAGAAGCAGAGTATGTTAATTAACATTGTAAGTAATGAAATTGGGGAGGATGATGTTGACTTGACTAGTAGAGGGGACACAGCAACCAGCACTGTGCCCactatggttcctggtcaaaagtagtgcactatatagagaatagggtgcccaTGTGACACATCCTCTATCAGCATCTATCATGCAGTGACACCAGGACTCCAGCAGAGGGCGATATACTGCATGGTAATCAACCAGTAATGCTAGTATTAGGGATGAGCCCTGCTCTTCAGAGTGAAATTCTAGACTATTCAGTATTTCCAACACATTTCAATAAAACGTTAAGGGCCACAGATCCTTTCAAGCCCCTTTTCTTCTTCCAAGAGAAGTGTGATAGTCGTCCTGCTTTGTGCTAACAATGACAGACGGACTGGTTGGTTTGGTGCTTACTACCGACATCACTAACAGAGTCATGAGCAGTGGACGTGGAACTGGTATGGTGGACCAATGGCCCAATGTGAAGAGACCCCGTGTCTGGTTTGATACTACGAGATCCTAATAGAGCTCGTTCTGATTGTACATGAATGTCCCCCTTCACGTGAAGATATTTCTGACAGTATTTGGCACTAATCTGACAGTTAAAATATAGATAAAGTAATCGGATAGTAGCATTAGGGAAGTGCACTGCACCTCCCAACCTCTAGAGGTCCCCGTCCTCCTCGTCCACTGTGTTGTCCAGGTCCAGGCCGTTGTGTAGGAACACTTCCTTCTCGATGTCCATTGGCTGCCCGCTGAGAGTGCAGTCTGGCTTGTATCTGTGCAGGTTACCGTCAGTATTGGCTAAAGCAGCTTCTACACTGTTACGGATCCCATAGCCAAAGTAGATGATGAA

Function

NR:

description
high affinity cationic amino acid transporter 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2385409 True 2532 lncRNA 0.42 2 44260892 44264149

Neighbor

gene id symbol gene type direction distance location
LOC110508097 LOC105006673 coding upstream 28069 44111550 ~ 44232823 (+)
LOC110507242 NA coding upstream 159001 44100049 ~ 44101891 (+)
cldn8 LOC106581534 coding upstream 162856 44095444 ~ 44098036 (+)
zgc:110333 LOC106581535 coding upstream 170677 44088591 ~ 44090215 (+)
LOC118944688 NA coding upstream 362333 43896547 ~ 43898559 (+)
cadm2b LOC106581539 coding downstream 603838 44867987 ~ 45361689 (+)
usp16 usp16 coding downstream 1179756 45443905 ~ 45479066 (+)
LOC110508103 LOC106581548 coding downstream 1216179 45480328 ~ 45487737 (+)
mtus2b LOC106593344 coding downstream 1229074 45493223 ~ 45664305 (+)
foxo1a LOC106581554 coding downstream 1439016 45703165 ~ 45791795 (+)
G2085907 NA non-coding upstream 117 44258844 ~ 44260775 (+)
G2085903 NA non-coding upstream 2389 44258212 ~ 44258503 (+)
G2085896 NA non-coding upstream 6013 44254656 ~ 44254879 (+)
G2085890 NA non-coding upstream 12241 44248431 ~ 44248651 (+)
G2085889 NA non-coding upstream 12529 44248147 ~ 44248363 (+)
G2085924 NA non-coding downstream 28791 44292940 ~ 44296887 (+)
G2085944 NA non-coding downstream 94376 44358525 ~ 44358740 (+)
G2085911 NA non-coding downstream 96671 44360820 ~ 44363795 (+)
G2085945 NA non-coding downstream 100530 44364679 ~ 44365516 (+)
G2085970 NA non-coding downstream 148294 44412443 ~ 44414303 (+)
G2085314 NA other upstream 141653 44118223 ~ 44119239 (+)
G2085122 NA other upstream 526998 43732395 ~ 43733894 (+)
G2085037 NA other upstream 728314 43532270 ~ 43532578 (+)
G2084659 NA other upstream 1196635 43063288 ~ 43064257 (+)
G2084156 NA other upstream 1999255 42260523 ~ 42261637 (+)
G2085969 NA other downstream 143904 44408053 ~ 44410050 (+)
G2087149 NA other downstream 1532950 45797099 ~ 45798593 (+)
G2087569 NA other downstream 2058935 46323084 ~ 46323694 (+)

Expression


Co-expression Network