G2086526


Basic Information

Item Value
gene id G2086526
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45143922 ~ 45146692 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2386283
agtgcactatatagggaatagggtgctgtttggtagtgcactatatatggaatagagtgctgtttggtagtgcactatatagggaatagggtgctttttggtagtgcactatatagggaatagggtgttgtttggtagtgtcctatatagggaatagggtgctgtttggtagtgtcctatatagggaatagggtgctgtttggtagtgcactatataggggatagggtgctgtttggtactgtactatatagggaatagggtgctgtttggttgtgcactatatagggaataggttgcttTTTTGAGACCCTACAccgtgtttctctgtctgcacgGCTCTGGGGCCATGAACAAATCTGATGATTGTTGGTCTATGAAGGAACTATCAGACAGACCGTCATGGATATCAGTCTAGACAAGTCAAATTACATGTTGCAGCACAGGGCTGAGAAGCATCAAGCAAAAGAGACACAGTTTTTTATTTCTGCCTCCCATATTAGACCCTttgtccgcccccccccc
>TU2386288
agtgcactatatagggaatagggtgctgtttggtagtgcactatatatggaatagagtgctgtttggtagtgcactatatagggaatagggtgctgtttggtagtgcactatatagggaatagggtgctgtttggtagtgtcctatatagggaatagggtgctgtttggtagtgcactatatagggaatagggtgctgtttggtagtgcactatatagggaatagggtgctgtttgagacAAAAACCCACTGTGGCCTGGCTGTGATGGCGTCTGATCAAACTGAAGAACTTGGTCATGTATCTCTAATGACACCCTAATGACTAAATAGTTCATAGGTCtccggtcaaatgtagtgcactatatagggaatagggtgctgtttggtagtgtcctatatagggaatagggtgctgtttggtagtgcactatataaggaatagggtgctgtttggtagtgtcctatatagggaatagggtgctttttggtagtgcactatatagggaatagggtgctgtttggtagtgtcctatatagggaatagggtgctgtttggtagtgtcctatatagggaatagggtgctgtttggtagtgcactatataggggatagggtgctgtttggtactgtactatatagggaatagggtgctgtttggttgtgcactatatagggaataggttgcttTTTTGAGACCCTACAccgtgtttctctgtctgcacgGCTCTGGGGCCATGAACAAATCTGATGATTGTTGGTCTATGAAGGAACTATCAGACAGACCGTCATGGATATCAGTCTAGACAAGTCAAATTACATGTTGCAGCACAGGGCTGAGAAGCATCAAGCAAAAGAGACACAGTTTTTTATTTCTGCCTCCCATATTAGACCCTttgtccgcccccccccc
>TU2386290
agtgcactatatagggaatagggtgctgtttggtagtgcactatatatggaatagagtgctgtttggtagtgcactatatagggaatagggtgctttttggtagtgcactatatagggaatagggtgttgtttggtagtgtcctatatagggaatagggtgctgtttggtagtgtcctatatagggaatagggtgctgtttggtagtgcactatataggggatagggtgctgtttggtactgtactatatagggaatagggtgctgtttggttgtgcactatatagggaataggttgcttTTTTGAGACCCTACAccgtgtttctctgtctgcacgGCTCTGGGGCCATGAACAAATCTGATGATTGTTGGTCTATGAAGGAACTATCAGACAGACCGTCATGGATATCAGTCTAGACAAGTCAAATTACATGTTGCAGCACAGGGCTGAGAAGCATCAAGCAAAAGAGACACAGTTTTTTATTTCTGCCTCCCATATTAGACCCTttgtccgcccccccccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2386283 False 523 lncRNA 0.44 2 45143922 45146692
TU2386288 False 910 lncRNA 0.44 3 45143922 45146692
TU2386290 True 523 lncRNA 0.44 2 45145579 45146692

Neighbor

gene id symbol gene type direction distance location
LOC110508097 LOC105006673 coding upstream 911099 44111550 ~ 44232823 (+)
LOC110507242 NA coding upstream 1042031 44100049 ~ 44101891 (+)
cldn8 LOC106581534 coding upstream 1045886 44095444 ~ 44098036 (+)
zgc:110333 LOC106581535 coding upstream 1053707 44088591 ~ 44090215 (+)
LOC118944688 NA coding upstream 1245363 43896547 ~ 43898559 (+)
usp16 usp16 coding downstream 297213 45443905 ~ 45479066 (+)
LOC110508103 LOC106581548 coding downstream 333636 45480328 ~ 45487737 (+)
mtus2b LOC106593344 coding downstream 346531 45493223 ~ 45664305 (+)
foxo1a LOC106581554 coding downstream 556473 45703165 ~ 45791795 (+)
LOC118944695 NA coding downstream 630327 45776962 ~ 45777979 (+)
G2086509 NA non-coding upstream 34020 45109551 ~ 45109902 (+)
G2086502 NA non-coding upstream 48249 45095279 ~ 45095673 (+)
G2086498 NA non-coding upstream 55167 45087967 ~ 45088755 (+)
G2086436 NA non-coding upstream 151985 44991491 ~ 44991937 (+)
G2086431 NA non-coding upstream 161969 44981123 ~ 44981953 (+)
G2086532 NA non-coding downstream 21665 45168357 ~ 45170831 (+)
G2086545 NA non-coding downstream 57955 45204647 ~ 45204951 (+)
G2086555 NA non-coding downstream 85295 45231987 ~ 45232576 (+)
G2086563 NA non-coding downstream 110267 45256959 ~ 45257479 (+)
G2086566 NA non-coding downstream 115064 45261756 ~ 45262232 (+)
G2085969 NA other upstream 733872 44408053 ~ 44410050 (+)
G2085314 NA other upstream 1024683 44118223 ~ 44119239 (+)
G2085122 NA other upstream 1410028 43732395 ~ 43733894 (+)
G2085037 NA other upstream 1611344 43532270 ~ 43532578 (+)
G2084659 NA other upstream 2079665 43063288 ~ 43064257 (+)
G2087149 NA other downstream 650407 45797099 ~ 45798593 (+)
G2087569 NA other downstream 1176392 46323084 ~ 46323694 (+)
G2087592 LOC106592078 other downstream 1347230 46493922 ~ 46499497 (+)

Expression


Co-expression Network