G2087145 (LOC106581545)


Basic Information

Item Value
gene id G2087145
gene name LOC106581545
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 45688027 ~ 45699728 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2387049
CTACATTCTCAAATAACTGTGACCTGCTCAACAAATGTCGGTATTATCCTTGCATATTCAAtagctacaacaacaacaaaaggcatattttatatattttatcaaaataaaaaaaaattacattcaGACTTTAAAGATAATGTTTAAACATAAGGTTCCATTTTGGGATGCCAACCAAAGTGCAGGCATTGGTGGAGGAAACAGCCAATCAGACGTCTCCAAACTTCTGCATCATCGCCTTACGGCTGAGCTCATAGGCCAAGAAGAGAGCTCCGTTGGCAGGGAAGGTTCTGATCATGGTGGGGGTGAGGCCTGAGTAGAGAGGAGCCACTCCTTCAGTGCGTATGATCCCCATCAAGGTCTTGATGAAGCCTTGCTGTCTGCCTGCTAGCGAGTGgacctggatcctggacttcacaCAGTCTATGGGATAGACCACCAGCCACAGGCACGCTCCCCCAAACCCACCACTGAACATTAGAGGGACAACgcCTATGCCATCCTTTTCGGTGTTCAGATGCTGAGCAAATGTCGTGCGACAGAGCTCGTAGGCTCCGAAGAAGCAGAAATACCCGGGAACCTCCCTGACGATGGTTGTAGTCAAACCCTGGTAGAACCCAAGAGGACCGTCCTTCCTCAACACAGTCCGAACCACGGACCACACCGAACTGGACCCAGGGAGACACAACACAGATATTGGAGGTATGAATCCCACTGCCTTGCAGGTATCTTACCAGAGGCCTCC
>TU2387052
ccggaataatactactgtaaatacacaggattcaggaataatactactgtaaatacacaggattcaggaataatactactgtaaatacacaggattcaggaataatactactgtaaatacacaggattccggaataatactactgtaaatacacaggattcaggaataatactactgtaaatacacaggattcaggaataatactactgtaaatacacaggattccggaataatactactgtaaatacacaggatTCAGGAATAATACCACTGTACAGGCATGTGTTTACCTGTAGGTGGCCATGAAGCAGTGGAGGAAGCCTCGGTACATGGAAGGGAAGGTCTGCATCTTCACCTTGGCTGTGTCAAACGGCTGGCCACTGAACACACAGGCTGTCCCACCTATCGCTCCAGCTGAGAGGTCTATGATGGCCTGGACCACTGGATGAGGtgccatgatgatgatgatgatgctaaaCCTTCACCACTGGTTATAGAAGGACACACCACTCACAGTAAACATTCACAGGCTGTTAAAGAAGAACAAAACCACTCACAGTAAACATTCACAGGCTGTTATCCAAGAACAAGACCACTCACAGTAAACATTCACAGGCTGTTATCGAAGTTAAACT

Function

NR:

description
mitochondrial ornithine transporter 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2387049 False 745 lncRNA 0.48 3 45688027 45691281
TU2387052 True 635 lncRNA 0.41 2 45697803 45699728

Neighbor

gene id symbol gene type direction distance location
mtus2b LOC106593344 coding upstream 23722 45493223 ~ 45664305 (+)
LOC110508103 LOC106581548 coding upstream 200318 45480328 ~ 45487737 (+)
usp16 usp16 coding upstream 208961 45443905 ~ 45479066 (+)
cadm2b LOC106581539 coding upstream 327372 44867987 ~ 45361689 (+)
LOC110508097 LOC105006673 coding upstream 1455204 44111550 ~ 44232823 (+)
foxo1a LOC106581554 coding downstream 3437 45703165 ~ 45791795 (+)
LOC118944695 NA coding downstream 77291 45776962 ~ 45777979 (+)
LOC110508109 LOC105029023 coding downstream 503869 46203597 ~ 46349567 (+)
LOC118944693 NA coding downstream 652267 46351995 ~ 46354652 (+)
nek3 nek3 coding downstream 675591 46375319 ~ 46411167 (+)
G2087144 NA non-coding upstream 235 45687447 ~ 45687792 (+)
G2087141 NA non-coding upstream 4025 45683784 ~ 45684002 (+)
G2087139 NA non-coding upstream 8600 45679225 ~ 45679427 (+)
G2087136 NA non-coding upstream 10657 45676181 ~ 45677370 (+)
G2086653 NA non-coding upstream 14938 45664343 ~ 45673089 (+)
G2087154 NA non-coding downstream 21152 45720880 ~ 45721268 (+)
G2087147 NA non-coding downstream 99390 45799118 ~ 45801587 (+)
G2087333 NA non-coding downstream 181600 45881328 ~ 45881554 (+)
G2087346 NA non-coding downstream 198818 45898546 ~ 45898783 (+)
G2085969 NA other upstream 1277977 44408053 ~ 44410050 (+)
G2085314 NA other upstream 1568788 44118223 ~ 44119239 (+)
G2085122 NA other upstream 1954133 43732395 ~ 43733894 (+)
G2087149 NA other downstream 97371 45797099 ~ 45798593 (+)
G2087569 NA other downstream 623356 46323084 ~ 46323694 (+)
G2087592 LOC106592078 other downstream 794194 46493922 ~ 46499497 (+)
G2087865 NA other downstream 1327391 47027119 ~ 47028563 (+)
prcp prcp other downstream 1337314 47020501 ~ 47056921 (+)

Expression


Co-expression Network