G2087580


Basic Information

Item Value
gene id G2087580
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 46358506 ~ 46359599 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2387613
gtcccatccttcagctaccctaaacccctcccatctatctctgatcaccatccagtcccatccttcagctaccctaaacccctcccatctatctctgatcaccatccagtccttcagctaccctaaacccctcccatctatctctgatcaccatccagtcccatccttcagctaccctaaacccctcccatctatctctgatcaccacccagtcccatccttcagctaccctaaacccctcccatctatctctgatcaccatccagtcccatccttcagctaccctaaacccctcccatctatctctgatcaccatccagtcccatccttcagctaccctcaacccctcccatctatctctgatcaccatccagtccttcagctaccctcaacccctcccatctatctctgatcaccatccagtcccatccttcagctaccctaaacccctcccatctatctctgatcaccatccagtcccatccttcagcccccctcaacccctcccatctatctctgaacaccatccagtcccatccttcagctcccctcaacccctcccatctatctctgatcaccatccagtccttcagctcccctaaacccctcccatctatctctgatcaccatccagtccttcagctcccctaaacccctcccatctatctctgatcaccacccagtcccatacttcagctaccctcaacccctcccatataTCTCTGatcaccatccagtccttcagctcccctaaACCCCTCCCATATATCTCTgatcaccacccagtcccat
>TU2387614
gtcccatccttcagctaccctaaacccctcccatctatctctgatcaccatccagtcccatccttcagctaccctaaacccctcccatctatctctgatcaccatccagtccttcagctaccctaaacccctcccatctatctctgatcaccatccagtcccatccttcagctaccctaaacccctcccatctatctctgatcaccacccagtcccatccttcagctaccctaaacccctcccatctatctctgatcaccatccagtcccatccttcagctaccctaaacccctcccatctatctctgatcaccatccagtcccatccttcagctaccctcaacccctcccatctatctctgatcaccatccagtccttcagctaccctcaacccctcccatctatctctgatcaccatccagtcccatccttcagctaccctaaacccctcccatctatctctgatcaccatccagtcccatccttcagcccccctcaacccctcccatctatctctgaacaccatccagtcccatccttcagctcccctcaacccctcccatctatctctgatcaccatccagtccttcagctcccctaaacccctcccatctatctctgatcaccacccagtcccatacttcagctaccctcaacccctcccatataTCTCTGatcaccatccagtccttcagctcccctaaACCCCTCCCATATATCTCTgatcaccacccagtcccatccttcagctcccctttttccacattttgttacattacagccttattctaaaattgattaaataaaacattttcccagAAGCTATTCCTCAGTAAAaaccacatgacagcccgctttgaatttgccaaaaggcatctaaaggactctcagaccatgagaaacaagattctctggtctgatgaaaccaagattgaaaacTTTGGCCTgcatgccaagtgtcatgtctggaggaaacctggcacca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2387613 False 792 lncRNA 0.53 2 46358506 46359356
TU2387614 True 986 lncRNA 0.50 3 46358506 46359599

Neighbor

gene id symbol gene type direction distance location
LOC118944693 NA coding upstream 3854 46351995 ~ 46354652 (+)
LOC110508109 LOC105029023 coding upstream 8939 46203597 ~ 46349567 (+)
foxo1a LOC106581554 coding upstream 566711 45703165 ~ 45791795 (+)
LOC118944695 NA coding upstream 580527 45776962 ~ 45777979 (+)
mtus2b LOC106593344 coding upstream 694201 45493223 ~ 45664305 (+)
nek3 nek3 coding downstream 15720 46375319 ~ 46411167 (+)
cysltr2b LOC106581558 coding downstream 213622 46573221 ~ 46576187 (+)
fndc3a LOC106581557 coding downstream 220021 46579620 ~ 46761993 (+)
LOC118944696 NA coding downstream 383397 46742996 ~ 46745025 (+)
mlnr LOC106581570 coding downstream 414813 46774412 ~ 46783031 (+)
G2087509 NA non-coding upstream 4025 46349128 ~ 46354481 (+)
G2087576 NA non-coding upstream 20683 46337328 ~ 46337823 (+)
G2087570 NA non-coding upstream 33965 46324069 ~ 46324541 (+)
G2087567 NA non-coding upstream 39340 46318549 ~ 46319166 (+)
G2087594 NA non-coding downstream 75255 46434854 ~ 46435799 (+)
G2087624 NA non-coding downstream 83340 46442939 ~ 46454547 (+)
G2087626 NA non-coding downstream 87014 46446613 ~ 46447586 (+)
G2087596 NA non-coding downstream 93459 46453058 ~ 46497945 (+)
G2087569 NA other upstream 34812 46323084 ~ 46323694 (+)
G2087149 NA other upstream 559913 45797099 ~ 45798593 (+)
LOC110508103 LOC106581548 other upstream 870769 45480328 ~ 45487737 (+)
G2085969 NA other upstream 1948456 44408053 ~ 44410050 (+)
G2087592 LOC106592078 other downstream 134323 46493922 ~ 46499497 (+)
G2087865 NA other downstream 667520 47027119 ~ 47028563 (+)
prcp prcp other downstream 677443 47020501 ~ 47056921 (+)
G2088729 NA other downstream 1165841 47525440 ~ 47528548 (+)
G2088732 NA other downstream 1172823 47532422 ~ 47537945 (+)

Expression


Co-expression Network