G2088382


Basic Information

Item Value
gene id G2088382
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47077743 ~ 47078349 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2388729
ttaggggttagggaaaatatgattttgaatgggaatcaattgtgtcTCTCCACAAGGTTAGTAAAACAAGACTGTCTGCTggtgtgtctgtttgtttgtgtgtaaggGTTGATTGTGTTGGTAGTCGGTGCAAATTATATCTATGGTGCATATGGTCTCTTAGGTGCAGATCTGTGCAGGGAGACGGCTAGGTTGAACTTTTCAGCAGTCTGGTGgcctggtggtagaagctgtctctgagcctgttggtccgagacATGACACTCTGACACCGCTTGCCAGATGGTAAACAGTCCTTGGCGATCTTTCAGTGTGGTGAATAAAAACAAATGTATAGATTTGGTTTTCTCATGTACTCTAATGCTCGTGTAAGTGAAAGTTAATTCACCCCTAATGAAAAAAAACGTTGTGTTACCCATGCCAGTCAATTTCAATatgtgttttgatttgatttaattcatTTAATTCATGCTCACAGCGGACAAGACTGACGACAAGACGCTACTTTAAAAACAC
>TU2388730
ttaggggttagggaaaatatgattttgaatgggaatcaattgtgtcTCTCCACAAGGTTAGTAAAACAAGACTGTCTGCTggtgtgtctgtttgtttgtgtgtaaggGTTGATTGTGTTGGTAGTCGGTGCAAATTATATCTATGGTGCATATGGTCTCTTAGGTGCAGATCTGTGCAGGGAGACGGCTAGGTTGAACTTTTCAGCAGTCTGGTGgcctggtggtagaagctgtctctgagcctgttggtccgagacATGACACTCTGACACCGCTTGCCAGATGGTAAACAGTCCTTGGCGATCTTTCAGTGTGGTGAATAAAAACAAATGTATAGATTTGGTTTTCTCATGTACTCTAATGCTCGTGTAAGTGAAAGTTAATTCACCCCTAATGAAAAAAAACGTTGTGTTACCCATGCCAGTCAATTTCAATatgtgttttgatttgatttaattcatTTAATTCATGCTCACAGCGGACAAGACTGACGACAAGACGCTACTTTAAAAACACCAGATATTACGTTCAATTAAAAGAGTCCAAGATTATAAGAATCCAGTTTTAAAGTCACATCTGATTATTAAACAGTGTCACAAAGCCCTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2388729 False 516 lncRNA 0.41 1 47077743 47078258
TU2388730 True 607 lncRNA 0.40 1 47077743 47078349

Neighbor

gene id symbol gene type direction distance location
LOC110513068 fam181b coding upstream 1022 47074530 ~ 47076721 (+)
prcp prcp coding upstream 20822 47020501 ~ 47056921 (+)
rab30 rab30 coding upstream 74339 46978103 ~ 47003404 (+)
LOC110508116 thrsp coding upstream 105712 46971287 ~ 46972031 (+)
guca1c LOC106581568 coding upstream 117964 46946870 ~ 46959779 (+)
LOC118944690 NA coding downstream 404041 47482390 ~ 47483034 (+)
tenm4 tenm4 coding downstream 562248 47640597 ~ 48319085 (+)
nars2 nars2 coding downstream 1322904 48401253 ~ 48458439 (+)
gab2 gab2 coding downstream 1382100 48460449 ~ 48624448 (+)
zmp:0000001236 LOC106581583 coding downstream 1555023 48633372 ~ 48774681 (+)
G2087881 NA non-coding upstream 13152 47064360 ~ 47064591 (+)
G2087869 NA non-coding upstream 36935 47040112 ~ 47040808 (+)
G2087731 NA non-coding upstream 41814 47035590 ~ 47035929 (+)
G2087838 NA non-coding upstream 133983 46942982 ~ 46943760 (+)
G2088383 NA non-coding downstream 1273 47079622 ~ 47080068 (+)
G2088386 NA non-coding downstream 2061 47080410 ~ 47080683 (+)
G2088387 NA non-coding downstream 4031 47082380 ~ 47082589 (+)
G2088444 NA non-coding downstream 128275 47206624 ~ 47207253 (+)
G2088449 NA non-coding downstream 134073 47212422 ~ 47214531 (+)
G2087865 NA other upstream 49180 47027119 ~ 47028563 (+)
G2087592 LOC106592078 other upstream 580856 46493922 ~ 46499497 (+)
G2087569 NA other upstream 754049 46323084 ~ 46323694 (+)
G2087149 NA other upstream 1279150 45797099 ~ 45798593 (+)
G2088729 NA other downstream 447091 47525440 ~ 47528548 (+)
G2088732 NA other downstream 454073 47532422 ~ 47537945 (+)
G2088870 NA other downstream 775757 47854106 ~ 47864829 (+)
G2089020 NA other downstream 1109860 48188209 ~ 48191362 (+)
G2089124 NA other downstream 1354129 48432478 ~ 48455486 (+)

Expression


Co-expression Network