G2088460


Basic Information

Item Value
gene id G2088460
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 47230997 ~ 47233060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2388855
AGAACTGGAATGTTCTTACAATACAATTTAGAACCGAAGAGTTCTTAGAACACAGTTTAGAACTGAAATGTTCTTAGAACACAGTTTAGAACTGGAATGTTCTTAGAACACAGCTTAGAACTGGAATGTTCTTAGAACACAGTTTAGAACTAGAGAGTTCTTAGAACACAGTTTAGAACTGGAGAGTTCTTAGAACACAGTTTAGAACTGGAGAGTTCTATTGATCTGCCACAACATCATGCTTCCCTATGATCCTCCTTCACATCCCTATCTGGAGAGGAGACATACTTTAACAACAGCAGCTACTCCACAGCTTTGTGGCCAGAGCAAAGCCCTGTCCAAGATCTGAGAGGGTGTGTCCCAAACGACACTCTACTccatatatagtgtactacttttgaccagatccctatgggccctacatatagaatagggtgtgatttgggacgcAGAACTAGTATCAGGAAGGTATAGTGGAAGGTAGAAtccagatggagggagaaagatatGAGTTGCATTTCTTCCATTTGGTAAAAATGCAATAAAATGGTATTATACAGGAACATAATCTCAATTACTCTTGGAAGAGCGATTATAAATatgttattttctctctctcacaataaTATGGTATAAACTAGCACTAGAGGTGAGCAACGCCTTGAATACTAAATATACATTTATGAAATGTAAGGCTTGGAGCCTGGTTACAGTCAGTTCTCACTTACCTAATAGACATTTCATTGTGCGTACTATACTACGTTGCTGCTATTATCTACTGCAGCCCTTCTGCAGTAAACTCCCGACCTTATAAAAGACTTGGTGTGGAATAAACCTGTGGACCTAATAAAGGGTTTTCTCCTTGGTAACCTCGTTATCTCCGCACAGTGTTAAAACTGTGACCTCCACAAAGTAACAGTCATGAATCGTGTGGTGGCAACGACTTGAGGTGTGAGTGAGTTCTGAGTGACGAACGCagacagtagagataacactgaTACTAATGTTAAAAGAAAAGGTATGCCAGAGTCCATTCAGTAAAAAACTAAATGTAGTGAAAGAGTGCCCTTCTGCAGTAGATAATAGCAGCAGCGTAGTATAGTACGCACAATGAAATGTCTATTAGATAAGTGAGAACTGACTGTAACCAGGCTCCAAGCCTTACATTTCATAAATGTATATTTAGCATTCAAAGGCGTTGCTCACCTCTAGTGCTAGTTTATACCATAttattgtgagagagagaaaagaacatATTTCTAATCGCTCTTCCAAGAGTAATTGAGATTATGTTCCTGTATAATACCATTTTATTGCATTTTTACCAAATGGAAGAAATGCAACTCATATCTTTCTCCCTTCATCTGGATTCTAACTTTCACTATACCTTCCTGATACTAGTACTgcgtcccaaatcacaccctattctatatgtagggcccatagggatctggtcaaaagtagtacactatatatggAGTAGAGTGTCGTTTGGGACACACCCTCTCAGATCTTGGACAGGGCTTTGCTCTGGCCACAAAGCTGTGGCGTAGCTGCTGTTGTTAAAGTATGTCTCCTCTCCAGATAGGGATGTGGAGGAGGATCATAGGGAAGCATGATGTTGTGGCAGATCAATAGAACTCTCCAGTTCTAATCTGTGTTCTAAGAACTCTCCAGTTCTAAACTGTTTTCCAAGAACTCTCCAGTTCTAAACTGTGTTCTAAGAACATTCCAGTTCTAAGCTGTGTTCTGAGAACATTCCAGTTCTTAGCTGTGTTCTGAGAACATTCCAGTTCTAAGCTGTGTTCTAAGAACATTTCAGTTCTTAGCTGTGTTCTGAGAACATTTAAGTTCTAAGCTGTGTTCTAAGAACATTCCAGTTCTAAACTGTTTTCTAAGAACATTCCAGTTCTAAACTGTGTTCTAAGAACAATCTTTGTTCTAAGCTGTGTTCTAAGAACATTCCAGTTCTAAGCTGTGTTCTGAGAACATTCCAGTTCTTAGCTGTGTTCTGAGAATGCCTGTCTGGCCTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2388855 True 2035 lncRNA 0.40 2 47230997 47233060

Neighbor

gene id symbol gene type direction distance location
LOC110513068 fam181b coding upstream 154276 47074530 ~ 47076721 (+)
prcp prcp coding upstream 174076 47020501 ~ 47056921 (+)
rab30 rab30 coding upstream 227593 46978103 ~ 47003404 (+)
LOC110508116 thrsp coding upstream 258966 46971287 ~ 46972031 (+)
guca1c LOC106581568 coding upstream 271218 46946870 ~ 46959779 (+)
LOC118944690 NA coding downstream 249330 47482390 ~ 47483034 (+)
tenm4 tenm4 coding downstream 407537 47640597 ~ 48319085 (+)
nars2 nars2 coding downstream 1168193 48401253 ~ 48458439 (+)
gab2 gab2 coding downstream 1227389 48460449 ~ 48624448 (+)
zmp:0000001236 LOC106581583 coding downstream 1400312 48633372 ~ 48774681 (+)
G2088458 NA non-coding upstream 2742 47224288 ~ 47228255 (+)
G2088455 NA non-coding upstream 7838 47221575 ~ 47223159 (+)
G2088449 NA non-coding upstream 16466 47212422 ~ 47214531 (+)
G2088444 NA non-coding upstream 23744 47206624 ~ 47207253 (+)
G2088387 NA non-coding upstream 148408 47082380 ~ 47082589 (+)
G2088576 NA non-coding downstream 68050 47301110 ~ 47301322 (+)
G2088579 NA non-coding downstream 71276 47304336 ~ 47304614 (+)
G2088591 NA non-coding downstream 99407 47332467 ~ 47332693 (+)
G2088648 NA non-coding downstream 163114 47396174 ~ 47398464 (+)
G2088653 NA non-coding downstream 166571 47399631 ~ 47401396 (+)
G2087865 NA other upstream 202434 47027119 ~ 47028563 (+)
G2087592 LOC106592078 other upstream 734110 46493922 ~ 46499497 (+)
G2087569 NA other upstream 907303 46323084 ~ 46323694 (+)
G2087149 NA other upstream 1432404 45797099 ~ 45798593 (+)
G2088729 NA other downstream 292380 47525440 ~ 47528548 (+)
G2088732 NA other downstream 299362 47532422 ~ 47537945 (+)
G2088870 NA other downstream 621046 47854106 ~ 47864829 (+)
G2089020 NA other downstream 955149 48188209 ~ 48191362 (+)
G2089124 NA other downstream 1199418 48432478 ~ 48455486 (+)

Expression


Co-expression Network